View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1859C-Insertion-8 (Length: 568)
Name: NF1859C-Insertion-8
Description: NF1859C
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1859C-Insertion-8 |
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| [»] scaffold0013 (3 HSPs) |
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Alignment Details
Target: scaffold0013 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 226 - 568
Target Start/End: Original strand, 39319 - 39655
Alignment:
| Q |
226 |
ccctattgatccaaatttacatagagaaatggattttgtacaatatttatcaattcaaggtgcgtcaacagaagtcc-atttactgcttatttatcaaag |
324 |
Q |
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| T |
39319 |
ccctattgatccaaatttacatagagaaatggatcttgtacagtatttatcgattcaaggtgcgtcaacagaagtcccatttactacttatttatcaaag |
39418 |
T |
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| Q |
325 |
agtnnnnnnnnnnnnnncaattacaaaggcatatcaaacccgctctcaaggtcccccgcctgcacctaatgaagannnnnnnctggaatttcaagggtat |
424 |
Q |
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| T |
39419 |
agtaaaaaaaaaa----caattacaaaggcatatcaaacccgctctcaaggtccccctcctgcacctaatgaagatttttttctggaatttcaagggtat |
39514 |
T |
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| Q |
425 |
agcttacgaaagtatgtatgaataatagagaccctttcatgcctaatctctgggcattatgggaataaggatgttgattttgtcgctcgttgttgttcgc |
524 |
Q |
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| T |
39515 |
agcttacgaaattatgtatgaataatagagaccctttcatgcctaatctctgggcattatggg-gtaaggatattgattttgtggctcgttgttgtt--c |
39611 |
T |
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| Q |
525 |
tatgctgtttcagggttttggcctactcctctagctgccgtata |
568 |
Q |
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| T |
39612 |
tatgcttttttagggttttggcctagtcctctagctcccgtata |
39655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 39031 - 39205
Alignment:
| Q |
8 |
caaaacactattagtctttctcaatagcatagactaaaaatcattttcaagactgaccacttataaacatatcaaatcatgttaaaattgcatataaaca |
107 |
Q |
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| T |
39031 |
caaaacactatcagtctttctcaatagcatagactaaaaatcattttcaagactggccacttataaacatatcaaatcatgttaaaattgcatataaaca |
39130 |
T |
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| Q |
108 |
tcaaatcctcggcgaattgtgtaatatgtgcattaaaatactttgaatcctcggtgagttgcgtaatatgtgcat |
182 |
Q |
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| T |
39131 |
tcaaatcctcggtgagttttgtagtatgtgcaataaaatacttcaaatactcggcgaattgtgtaatatgtgcat |
39205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 108 - 225
Target Start/End: Original strand, 39173 - 39290
Alignment:
| Q |
108 |
tcaaatcctcggcgaattgtgtaatatgtgcattaaaatactttgaatcctcggtgagttgcgtaatatgtgcatatgagtcaaaagaagaagaataata |
207 |
Q |
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| T |
39173 |
tcaaatactcggcgaattgtgtaatatgtgcattaaaatactttgaatcctcggtgagttgcgtaatatgtgcatatgagtcaagagaagaagaagaata |
39272 |
T |
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| Q |
208 |
attatattgtgcctgatg |
225 |
Q |
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| T |
39273 |
attatactgtgcctgatg |
39290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 411 - 475
Target Start/End: Complemental strand, 29478977 - 29478913
Alignment:
| Q |
411 |
aatttcaagggtatagcttacgaaagtatgtatgaataatagagaccctttcatgcctaatctct |
475 |
Q |
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| T |
29478977 |
aatttcaagggtataggttacaaaattttgtatgaataataaagaccctttaaagcctaatctct |
29478913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 487
Target Start/End: Original strand, 24575538 - 24575584
Alignment:
| Q |
441 |
tatgaataatagagaccctttcatgcctaatctctgggcattatggg |
487 |
Q |
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| T |
24575538 |
tatgaacaatagagaccctttaatgcctaatctttgggcactatggg |
24575584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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