View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1859C-Insertion-9 (Length: 535)
Name: NF1859C-Insertion-9
Description: NF1859C
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1859C-Insertion-9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 7 - 535
Target Start/End: Complemental strand, 24483046 - 24482519
Alignment:
| Q |
7 |
agagtccactcttgattcgttcttttacaaaaatgtttgaccaaatctaaaatgcaaagagtacctaggtcatgtacttcttagactttgtaaacttcaa |
106 |
Q |
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| T |
24483046 |
agagtccactcttgattcgttcttttacagaaatgtttgatcaaatctaaaatgtaaagagtacctaggtcatgtacttctt-gactttgtaaacttcaa |
24482948 |
T |
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| Q |
107 |
gttgaaatataaaatagtgacaaagcaaggtgtgcatcacttcaaaagcgagatatctactaaaatgttgagccactttgtatatacaacttaaaaaacc |
206 |
Q |
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| T |
24482947 |
gttgaaatataaaatagtgacaaagcaaggtgtgcatcacttcaaaagcgagatatctaataaaatgttgagccactttgtatatacaacttaaaaaatc |
24482848 |
T |
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| Q |
207 |
cttagatagtgaaggtgataacactatataaagagttacaagtcgatacttaaagcaataaaaacacaaatcttctatacaacaatagaagaaatataag |
306 |
Q |
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| T |
24482847 |
cttagatagtgaaggtgataacactatataaagagttacaagtcgatacttaaagcaataaaaacacaaatcttctatacaacaatagaagaaatataag |
24482748 |
T |
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| Q |
307 |
gttacacattaagataatatgagaacatcaactgagccgaggcacatgcctcgactcgtgtatgcaatagcattttgcataattgctattagtacctttg |
406 |
Q |
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| T |
24482747 |
gttacacattaagagaatatgggaacatcaattgagccgaggaatttgcctcgactcatgtatacaatagcattttgcatgattgctattagtacttttg |
24482648 |
T |
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| Q |
407 |
ctaccgctgatgataagccttactatggaagccgacaaccatactacaactatccacaaccaacaacaccaccatcttactattacaaaccaccgccata |
506 |
Q |
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||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | || |
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| T |
24482647 |
ctaccgctgatgataagccttactatggaggccaacaaccatactacaactatccacaaccaacaacgccaccatcttactattacaaaccaccgtcgta |
24482548 |
T |
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| Q |
507 |
tagtaactatcaatctccacctccatatg |
535 |
Q |
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| T |
24482547 |
taataactatcaatctccacctctatatg |
24482519 |
T |
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