View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1883-3-Insertion-3 (Length: 247)

Name: NF1883-3-Insertion-3
Description: 454-NF1883-3
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1883-3-Insertion-3
NF1883-3-Insertion-3
[»] chr7 (23 HSPs)
chr7 (1-139)||(42856104-42856242)
chr7 (1-136)||(42857710-42857842)
chr7 (142-232)||(1348801-1348891)
chr7 (145-235)||(35214970-35215059)
chr7 (142-247)||(5559487-5559592)
chr7 (145-247)||(20183932-20184031)
chr7 (157-236)||(29590971-29591050)
chr7 (142-236)||(1286528-1286622)
chr7 (145-247)||(20366210-20366312)
chr7 (142-241)||(8039806-8039906)
chr7 (155-247)||(27995437-27995528)
chr7 (149-247)||(42990877-42990975)
chr7 (142-235)||(28256818-28256910)
chr7 (158-236)||(5075459-5075537)
chr7 (158-236)||(5805424-5805502)
chr7 (163-236)||(28256675-28256748)
chr7 (165-236)||(1349019-1349090)
chr7 (158-236)||(5559285-5559363)
chr7 (35-132)||(42849276-42849374)
chr7 (147-236)||(5805203-5805292)
chr7 (180-237)||(20366406-20366463)
chr7 (158-235)||(27995237-27995314)
chr7 (178-235)||(42990696-42990753)
[»] chr8 (21 HSPs)
chr8 (145-247)||(30576314-30576416)
chr8 (142-247)||(14871225-14871330)
chr8 (149-239)||(23553745-23553834)
chr8 (158-247)||(40553116-40553205)
chr8 (145-236)||(16197191-16197282)
chr8 (146-221)||(25730017-25730092)
chr8 (146-221)||(25737503-25737578)
chr8 (149-236)||(30576539-30576626)
chr8 (142-247)||(39701044-39701148)
chr8 (144-236)||(9276644-9276736)
chr8 (145-240)||(5358945-5359040)
chr8 (158-236)||(23553530-23553608)
chr8 (158-235)||(39701272-39701350)
chr8 (145-247)||(44041156-44041258)
chr8 (180-247)||(23179160-23179227)
chr8 (145-235)||(6236118-6236208)
chr8 (157-247)||(8714020-8714110)
chr8 (145-203)||(34686573-34686631)
chr8 (158-236)||(16197415-16197493)
chr8 (179-236)||(14871109-14871166)
chr8 (191-247)||(12684797-12684853)
[»] chr3 (12 HSPs)
chr3 (142-247)||(21376726-21376831)
chr3 (145-247)||(31247503-31247605)
chr3 (145-240)||(14629535-14629630)
chr3 (146-247)||(35555842-35555943)
chr3 (142-235)||(4276295-4276388)
chr3 (145-235)||(33974968-33975057)
chr3 (178-235)||(14629411-14629468)
chr3 (158-247)||(24707583-24707672)
chr3 (142-247)||(53783035-53783140)
chr3 (158-236)||(21376890-21376967)
chr3 (144-221)||(3087987-3088064)
chr3 (158-219)||(31247302-31247363)
[»] chr2 (7 HSPs)
chr2 (142-247)||(36196363-36196468)
chr2 (144-247)||(20535819-20535922)
chr2 (144-235)||(19080790-19080881)
chr2 (158-236)||(11871621-11871699)
chr2 (145-219)||(27893448-27893522)
chr2 (149-247)||(39301482-39301580)
chr2 (158-221)||(20535618-20535681)
[»] chr6 (8 HSPs)
chr6 (142-247)||(17180000-17180103)
chr6 (145-236)||(28630496-28630587)
chr6 (158-247)||(10962914-10963003)
chr6 (142-247)||(11527687-11527792)
chr6 (155-222)||(9902072-9902139)
chr6 (169-236)||(9946585-9946652)
chr6 (158-236)||(17179800-17179877)
chr6 (145-203)||(24139411-24139469)
[»] chr1 (15 HSPs)
chr1 (145-247)||(10686573-10686675)
chr1 (145-236)||(34254662-34254752)
chr1 (142-221)||(37663206-37663285)
chr1 (142-236)||(49650725-49650819)
chr1 (149-236)||(4030623-4030710)
chr1 (158-247)||(10686372-10686461)
chr1 (158-236)||(27351227-27351308)
chr1 (145-235)||(4772517-4772607)
chr1 (158-235)||(49650888-49650965)
chr1 (158-221)||(8902937-8903000)
chr1 (145-236)||(8903149-8903240)
chr1 (147-233)||(29418918-29419004)
chr1 (158-236)||(34254885-34254962)
chr1 (158-231)||(27351419-27351492)
chr1 (197-247)||(39302480-39302530)
[»] chr5 (16 HSPs)
chr5 (145-240)||(20728691-20728785)
chr5 (158-247)||(35190080-35190169)
chr5 (158-240)||(30738123-30738205)
chr5 (149-247)||(19278871-19278969)
chr5 (142-247)||(13543247-13543351)
chr5 (158-247)||(13543461-13543550)
chr5 (141-221)||(38405439-38405519)
chr5 (145-203)||(35890929-35890987)
chr5 (162-221)||(36418283-36418342)
chr5 (158-235)||(1722669-1722746)
chr5 (158-247)||(19279081-19279170)
chr5 (174-235)||(26275682-26275743)
chr5 (158-235)||(35190293-35190370)
chr5 (146-220)||(5734868-5734941)
chr5 (169-247)||(18249145-18249223)
chr5 (158-220)||(30737916-30737978)
[»] chr4 (10 HSPs)
chr4 (147-222)||(8408744-8408819)
chr4 (142-236)||(31229638-31229732)
chr4 (158-221)||(52182053-52182116)
chr4 (158-247)||(52181891-52181980)
chr4 (158-236)||(52567859-52567937)
chr4 (153-247)||(52568058-52568149)
chr4 (161-236)||(19681367-19681442)
chr4 (148-247)||(44916179-44916278)
chr4 (149-247)||(19632106-19632204)
chr4 (179-247)||(30542996-30543064)
[»] scaffold0027 (2 HSPs)
scaffold0027 (142-247)||(9545-9650)
scaffold0027 (169-247)||(9761-9839)
[»] scaffold0070 (2 HSPs)
scaffold0070 (146-221)||(28708-28783)
scaffold0070 (158-236)||(28930-29007)
[»] scaffold0746 (1 HSPs)
scaffold0746 (153-221)||(420-488)


Alignment Details
Target: chr7 (Bit Score: 131; Significance: 4e-68; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 42856104 - 42856242
Alignment:
Q  1 tttgcttctttacatagcaccaaaacatacgaggattatgtcaagatatacgaacaaggaagtttttctttgcactatcttttctgttgcaagcatttcg 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42856104 tttgcttctttacatagcaccaaaacatatgaggattatgtcaagatatacgaacaaggaagtttttctttgcactatcttttctgttgcaagcatttcg 42856203  T
Q  101 cacatatcgggtttattgtttcgaatattcaccattaat 139  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  42856204 cacatatcgggtttatcgtttcgaatattcaccattaat 42856242  T

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Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 42857710 - 42857842
Alignment:
Q  1 tttgcttctttacatagcaccaaaacatacgaggattatgtcaagatatacgaacaaggaagtttttctttgcactatcttttctgttgcaagcatttcg 100  Q
    ||||||||||||||| ||||||||||||  ||  |||||||| ||||||| ||| ||||||||||||||||||| |||||||||| |||||| ||||||     
T  42857710 tttgcttctttacat-gcaccaaaacat--gataattatgtcgagatatatgaataaggaagtttttctttgcagtatcttttctattgcaaacatttca 42857806  T
Q  101 cacatatcgggtttattgtttcgaatattcaccatt 136  Q
    || |||| ||||||||  ||||||||||||||||||    
T  42857807 catatattgggtttatcttttcgaatattcaccatt 42857842  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 1348801 - 1348891
Alignment:
Q  142 tgctgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtca 232  Q
    |||||||||||||||||||||||||| |||| |||||||||| || | |||||| ||||||||| || ||||||||||||  |||||||||    
T  1348801 tgctgtcagtctccgtttaactgatgctgatgtagtcgttaaattattgacttggatcaaaatgttgccttttaaaagctccagggtgtca 1348891  T

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Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 145 - 235
Target Start/End: Original strand, 35214970 - 35215059
Alignment:
Q  145 tgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaa 235  Q
    |||||||||||||||||||||||||||| ||| |||| |||||| |||||| ||||||||| || ||||||||||||  ||||||||||||    
T  35214970 tgtcagtctccgtttaactgatgttgatgtagccgtttagttgttgacttggatcaaaatgctg-cttttaaaagctcgagggtgtcaaaa 35215059  T

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Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 247
Target Start/End: Complemental strand, 5559592 - 5559487
Alignment:
Q  142 tgctgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacactac 241  Q
    |||| ||||| ||||||||||||||| |||| ||||||||||||||| || ||  ||||||||| || ||||||||||||  ||||||||||||| ||||    
T  5559592 tgctatcagtatccgtttaactgatgctgatgtagtcgttaagttgttgagtttgatcaaaatgctgccttttaaaagctccagggtgtcaaaacgctac 5559493  T
Q  242 atttaa 247  Q
     |||||    
T  5559492 gtttaa 5559487  T

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Target: chr7; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 145 - 247
Target Start/End: Original strand, 20183932 - 20184031
Alignment:
Q  145 tgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacactacatt 244  Q
    ||||||||| ||||||||| ||| ||   |||| |||||||||| |||||| ||||||| | |||||||||||||||| ||||||||||||| |||| ||    
T  20183932 tgtcagtcttcgtttaacttatgatg---tagttgttaagttgttgacttggatcaaaacgttgtcttttaaaagcttgagggtgtcaaaaccctacgtt 20184028  T

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Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 29591050 - 29590971
Alignment:
Q  157 tttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaac 236  Q
    |||||||||||||||| || | |||||||||| |||||||||||||||||||  |||||||||||  ||| |||||||||    
T  29591050 tttaactgatgttgatgtatttgttaagttgttgacttgaatcaaaatgatgctttttaaaagctccaggatgtcaaaac 29590971  T

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Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 236
Target Start/End: Original strand, 1286528 - 1286622
Alignment:
Q  142 tgctgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaac 236  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||| |||||| ||| |||   |   |||||||||||  |||||||||||||    
T  1286528 tgctgtcagtctccgtttaactgatgttgatgtagccgttaagttgttgacttggatccaaacactactttttaaaagctccagggtgtcaaaac 1286622  T

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Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 247
Target Start/End: Original strand, 20366210 - 20366312
Alignment:
Q  145 tgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacactacatt 244  Q
    ||||||| | ||||||||| ||| |||| ||||||||||||||| || ||  ||||||||| || |||||||||| || ||||| |||||||||||| ||    
T  20366210 tgtcagtattcgtttaactaatgctgatgtagtcgttaagttgttgattttgatcaaaatgttgccttttaaaagtttcagggtatcaaaacactacgtt 20366309  T
Q  245 taa 247  Q
    |||    
T  20366310 taa 20366312  T

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Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 241
Target Start/End: Original strand, 8039806 - 8039906
Alignment:
Q  142 tgctgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagct-ttagggtgtcaaaacacta 240  Q
    |||||| ||| ||||||||||||||| |||| ||| ||||||||||| |||||  ||||||||| || ||||||||||||   ||||||||||||| |||    
T  8039806 tgctgttagtatccgtttaactgatgctgatgtagccgttaagttgttgactttgatcaaaatgctgccttttaaaagctcgcagggtgtcaaaacgcta 8039905  T
Q  241 c 241  Q
    |    
T  8039906 c 8039906  T

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Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 247
Target Start/End: Complemental strand, 27995528 - 27995437
Alignment:
Q  155 cgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacactacatttaa 247  Q
    ||||||||||||| | || ||||||||||||||| |||||| ||||||||| || |||||||||| || | ||||||||||| |||| |||||    
T  27995528 cgtttaactgatgctaatttagtcgttaagttgttgacttggatcaaaatgttgccttttaaaaggttca-ggtgtcaaaacgctacgtttaa 27995437  T

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Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 42990975 - 42990877
Alignment:
Q  149 agtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacactacatttaa 247  Q
    ||||||| ||||||||||| | || ||| ||||||||||| |||||| ||||||||| ||  |||||||| ||  ||||||| ||||| ||||||||||    
T  42990975 agtctccatttaactgatgctaatgtagccgttaagttgttgacttggatcaaaatgctgaattttaaaaactcaagggtgttaaaacgctacatttaa 42990877  T

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Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 235
Target Start/End: Complemental strand, 28256910 - 28256818
Alignment:
Q  142 tgctgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaa 235  Q
    |||||||||| | |||||||||||||||||| |||||||||| |||| || ||  | ||||||  || |||||||||||| |||||||||||||    
T  28256910 tgctgtcagtattcgtttaactgatgttgatgtagtcgttaaattgttgatttagaacaaaatactg-cttttaaaagctctagggtgtcaaaa 28256818  T

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Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 5075459 - 5075537
Alignment:
Q  158 ttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaac 236  Q
    |||||||||| |||| ||| ||||||||||| |||||| ||||||| | ||  |||||||||||  |||||||||||||    
T  5075459 ttaactgatgctgatgtagccgttaagttgttgacttggatcaaaacgctgcattttaaaagctcgagggtgtcaaaac 5075537  T

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Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 5805502 - 5805424
Alignment:
Q  158 ttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaac 236  Q
    ||||| |||| |||| ||| | ||||||||| |||||| ||||||| | ||||||||||||| | ||||||||||||||    
T  5805502 ttaaccgatgctgatgtagcctttaagttgttgacttggatcaaaacgctgtcttttaaaagttctagggtgtcaaaac 5805424  T

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Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 28256675 - 28256748
Alignment:
Q  163 tgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaac 236  Q
    |||||||||| |||  |||||||||| |||||| ||||||| | || ||||||||| || ||||||||||||||    
T  28256675 tgatgttgatgtagcagttaagttgttgacttggatcaaaacgctgccttttaaaaactctagggtgtcaaaac 28256748  T

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Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 236
Target Start/End: Complemental strand, 1349090 - 1349019
Alignment:
Q  165 atgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaac 236  Q
    |||||||| ||||||||||||||| |||||  ||||||| | || |||||||||| || || ||||||||||    
T  1349090 atgttgatgtagtcgttaagttgttgactttgatcaaaacgctgccttttaaaagtttcagagtgtcaaaac 1349019  T

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Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 5559285 - 5559363
Alignment:
Q  158 ttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaac 236  Q
    |||| |||||||||| ||||| ||||||||| |||||| ||||||| |  | ||||||||| ||  |||||||||||||    
T  5559285 ttaattgatgttgatgtagtcattaagttgttgacttggatcaaaacgccgccttttaaaatctccagggtgtcaaaac 5559363  T

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Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 132
Target Start/End: Original strand, 42849276 - 42849374
Alignment:
Q  35 attatgtcaagatatacgaacaaggaagtttttctttgcactatcttttctgttgcaagcatttcgcac-atatcgggtttattgtttcgaatattcac 132  Q
    |||||||  ||| ||| ||| |||||| ||| |||||||| | ||||||   ||||||||||||||||| || | |||||||| |||||||||||||||    
T  42849276 attatgttgagacataagaataaggaaatttctctttgcattgtctttttctttgcaagcatttcgcacaatgttgggtttatagtttcgaatattcac 42849374  T

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Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 236
Target Start/End: Original strand, 5805203 - 5805292
Alignment:
Q  147 tcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaac 236  Q
    ||||||||| ||||| ||||| |||| | | | ||||||||| |||||| ||||||||| ||  ||||||||| |  |||||||||||||    
T  5805203 tcagtctccatttaattgatgctgatgtggcctttaagttgttgacttggatcaaaatgctgcattttaaaagttcgagggtgtcaaaac 5805292  T

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Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 20366463 - 20366406
Alignment:
Q  180 ttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaaca 237  Q
    ||||||||| |||||| |||||||  |||||| |||||||||  ||||||||||||||    
T  20366463 ttaagttgttgacttggatcaaaacaatgtctgttaaaagctccagggtgtcaaaaca 20366406  T

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Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 27995237 - 27995314
Alignment:
Q  158 ttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaa 235  Q
    |||| |||||||||| | | ||||||||||| |||||  ||||||||| |  || |||||||||| ||||||||||||    
T  27995237 ttaattgatgttgatgttgccgttaagttgttgactttgatcaaaatgcttcctattaaaagcttcagggtgtcaaaa 27995314  T

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Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 42990696 - 42990753
Alignment:
Q  178 cgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaa 235  Q
    ||||||||||| |||||| ||||||| | || |||||||||| | |||||||||||||    
T  42990696 cgttaagttgttgacttggatcaaaacgctgccttttaaaagttatagggtgtcaaaa 42990753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 145 - 247
Target Start/End: Original strand, 30576314 - 30576416
Alignment:
Q  145 tgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacactacatt 244  Q
    |||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||| || ||||||||||||   ||||||||||||||||| ||    
T  30576314 tgtcagtctccgtttaactgatgttgatgtagccgttaagttgttgacttgaatcaaaatgttgccttttaaaagctcgggggtgtcaaaacactacgtt 30576413  T
Q  245 taa 247  Q
    |||    
T  30576414 taa 30576416  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 142 - 247
Target Start/End: Complemental strand, 14871330 - 14871225
Alignment:
Q  142 tgctgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacactac 241  Q
    |||||||||||||||||||| ||||| |||| ||||||||||||||| |||||| ||||||| |||| ||||||||||||| |||||||| |||| ||||    
T  14871330 tgctgtcagtctccgtttaattgatgctgatgtagtcgttaagttgttgacttggatcaaaacgatgccttttaaaagcttcagggtgtcgaaactctac 14871231  T
Q  242 atttaa 247  Q
     |||||    
T  14871230 gtttaa 14871225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 149 - 239
Target Start/End: Complemental strand, 23553834 - 23553745
Alignment:
Q  149 agtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacact 239  Q
    |||||||||||||||||||||||| ||||| ||||||||| |||||| ||||||||||||| |||||||||||  ||||||||||||||||    
T  23553834 agtctccgtttaactgatgttgatgtagtctttaagttgttgacttggatcaaaatgatgt-ttttaaaagctcgagggtgtcaaaacact 23553745  T

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Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 158 - 247
Target Start/End: Complemental strand, 40553205 - 40553116
Alignment:
Q  158 ttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacactacatttaa 247  Q
    |||| |||||||||||||| ||||||||||| |||||| ||||||||| |||||||||||||||  ||||||||||||| |||| |||||    
T  40553205 ttaattgatgttgatatagccgttaagttgttgacttgtatcaaaatgttgtcttttaaaagctccagggtgtcaaaacgctacctttaa 40553116  T

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Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 236
Target Start/End: Original strand, 16197191 - 16197282
Alignment:
Q  145 tgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaac 236  Q
    |||||||||||||||||||||||||||| |||  ||||| |||| |||||| ||||||||  || ||||||||||||| | |||||||||||    
T  16197191 tgtcagtctccgtttaactgatgttgatctagctgttaaattgttgacttggatcaaaatattgccttttaaaagcttcaaggtgtcaaaac 16197282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 146 - 221
Target Start/End: Complemental strand, 25730092 - 25730017
Alignment:
Q  146 gtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagct 221  Q
    |||||| ||||||||||||||| |||| ||||||||||||||| |||||| ||||||||| |  ||||||||||||    
T  25730092 gtcagtatccgtttaactgatgctgatgtagtcgttaagttgttgacttggatcaaaatgttaccttttaaaagct 25730017  T

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Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 146 - 221
Target Start/End: Complemental strand, 25737578 - 25737503
Alignment:
Q  146 gtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagct 221  Q
    |||||| ||||||||||||||| |||| ||||||||||||||| |||||| ||||||||| |  ||||||||||||    
T  25737578 gtcagtatccgtttaactgatgctgatgtagtcgttaagttgttgacttggatcaaaatgttaccttttaaaagct 25737503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 236
Target Start/End: Complemental strand, 30576626 - 30576539
Alignment:
Q  149 agtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaac 236  Q
    |||||||||||||||||||| ||| ||| ||||||||||| |||||| |||||||   || ||||||||||||  |||||||||||||    
T  30576626 agtctccgtttaactgatgtcgatgtagccgttaagttgttgacttggatcaaaacattgccttttaaaagctccagggtgtcaaaac 30576539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 247
Target Start/End: Original strand, 39701044 - 39701148
Alignment:
Q  142 tgctgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacactac 241  Q
    |||||||||||| ||||||||| ||| |||| ||| ||||||||||| |||||  ||||||||| || ||||||||||||  || |||||||||| ||||    
T  39701044 tgctgtcagtcttcgtttaactaatgctgatgtagccgttaagttgttgactt-tatcaaaatgttgccttttaaaagctcgagtgtgtcaaaacgctac 39701142  T
Q  242 atttaa 247  Q
     |||||    
T  39701143 gtttaa 39701148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 236
Target Start/End: Original strand, 9276644 - 9276736
Alignment:
Q  144 ctgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaac 236  Q
    ||||||| ||| |||||||||||||| || ||| | ||||||||| |||||| |||||||||||| |||||||||| |  ||| |||||||||    
T  9276644 ctgtcaggctctgtttaactgatgttcatgtagcctttaagttgttgacttggatcaaaatgatgccttttaaaagttcgaggatgtcaaaac 9276736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 145 - 240
Target Start/End: Complemental strand, 5359040 - 5358945
Alignment:
Q  145 tgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacacta 240  Q
    |||||||||||||||||||||||||||| |||   ||||||||| |||||  ||||||| | || ||||||||||||  || ||||| ||||||||    
T  5359040 tgtcagtctccgtttaactgatgttgatgtagcttttaagttgttgactttgatcaaaaagctgccttttaaaagctccagagtgtcgaaacacta 5358945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 23553530 - 23553608
Alignment:
Q  158 ttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaac 236  Q
    ||||||||||||||| ||| |||||| |||| |||||| ||||||| |  ||||||||||||||  |||||||||||||    
T  23553530 ttaactgatgttgatgtagccgttaaattgttgacttggatcaaaacgtcgtcttttaaaagctccagggtgtcaaaac 23553608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 39701350 - 39701272
Alignment:
Q  158 ttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagct-ttagggtgtcaaaa 235  Q
    |||||||||| | || ||| ||||||||||| |||||| ||||||||| ||||||||||||||| | ||||||||||||    
T  39701350 ttaactgatgctaatttagacgttaagttgttgacttggatcaaaatgctgtcttttaaaagctctaagggtgtcaaaa 39701272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 247
Target Start/End: Complemental strand, 44041258 - 44041156
Alignment:
Q  145 tgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacactacatt 244  Q
    ||||| ||||||||||||| ||| |||| ||   ||||||| || |||||| ||||||||| |  ||||||||||||| ||||||||||||| |||| ||    
T  44041258 tgtcaatctccgtttaacttatgctgatgtaactgttaagtagttgacttggatcaaaatgctaccttttaaaagcttcagggtgtcaaaacgctacgtt 44041159  T
Q  245 taa 247  Q
    |||    
T  44041158 taa 44041156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 23179160 - 23179227
Alignment:
Q  180 ttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacactacatttaa 247  Q
    ||||||||| |||||| ||||||||  |||||||||||||||| || |||||||||| |||| |||||    
T  23179160 ttaagttgttgacttggatcaaaatactgtcttttaaaagcttcagagtgtcaaaacgctacgtttaa 23179227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 235
Target Start/End: Complemental strand, 6236208 - 6236118
Alignment:
Q  145 tgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaa 235  Q
    ||||| |||| |||||||||||| |||| |  |||||||||||| |||||  ||||||| | ||||||||||| | || ||||||||||||    
T  6236208 tgtcaatctcggtttaactgatgctgatgttatcgttaagttgttgacttagatcaaaacgctgtcttttaaatgtttcagggtgtcaaaa 6236118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 247
Target Start/End: Original strand, 8714020 - 8714110
Alignment:
Q  157 tttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacactacatttaa 247  Q
    |||| |||||| | || ||| ||||||||||| |||||||||||||||| |   |||||||||||  ||||| |||||||||||| |||||    
T  8714020 tttagctgatgctaatgtagccgttaagttgttgacttgaatcaaaatgctactttttaaaagctccagggtatcaaaacactacgtttaa 8714110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 203
Target Start/End: Original strand, 34686573 - 34686631
Alignment:
Q  145 tgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaa 203  Q
    ||||||||| ||||||||||||| |||| ||| ||||||||||  ||||||||||||||    
T  34686573 tgtcagtcttcgtttaactgatgatgatgtagccgttaagttggtgacttgaatcaaaa 34686631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 16197493 - 16197415
Alignment:
Q  158 ttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaac 236  Q
    ||||||||||||| | |||| |||||||||| |||||  ||||||| | || |||||||||| || | |||||||||||    
T  16197493 ttaactgatgttggtgtagttgttaagttgttgacttagatcaaaacgttgccttttaaaagtttcaaggtgtcaaaac 16197415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 236
Target Start/End: Original strand, 14871109 - 14871166
Alignment:
Q  179 gttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaac 236  Q
    |||||||||| |||||| ||||||| | ||  |||||||||||| |||||||||||||    
T  14871109 gttaagttgttgacttggatcaaaacgttggattttaaaagcttcagggtgtcaaaac 14871166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 12684797 - 12684853
Alignment:
Q  191 acttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacactacatttaa 247  Q
    ||||| ||||||||||||| |||||||||||  |||||||||| || || |||||||    
T  12684797 acttggatcaaaatgatgtgttttaaaagctccagggtgtcaagacgctgcatttaa 12684853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 142 - 247
Target Start/End: Original strand, 21376726 - 21376831
Alignment:
Q  142 tgctgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacactac 241  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||| |||||| |||||||||||||||  | ||||||||||| ||||    
T  21376726 tgctgtcagtctccgtttaactgatgttgatgtagccgttaagttgttgacttgaattaaaatgttgtcttttaaaagctcgatggtgtcaaaacgctac 21376825  T
Q  242 atttaa 247  Q
     |||||    
T  21376826 gtttaa 21376831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 145 - 247
Target Start/End: Complemental strand, 31247605 - 31247503
Alignment:
Q  145 tgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacactacatt 244  Q
    ||||||||||||||||||||||| ||||||||| |||||||||| |||||  ||||||||| || ||||||||||||| | | ||| |||||||||| ||    
T  31247605 tgtcagtctccgtttaactgatgctgatatagttgttaagttgttgactttgatcaaaatgctgccttttaaaagcttcaagatgttaaaacactacgtt 31247506  T
Q  245 taa 247  Q
    |||    
T  31247505 taa 31247503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 145 - 240
Target Start/End: Complemental strand, 14629630 - 14629535
Alignment:
Q  145 tgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacacta 240  Q
    ||||||||||| |||||||||||||||| ||| ||||||||| | |||||| ||||||||| || ||||||||||||  |||||||||||| ||||    
T  14629630 tgtcagtctccatttaactgatgttgatgtagccgttaagttattgacttggatcaaaatgctgccttttaaaagctcgagggtgtcaaaaaacta 14629535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 146 - 247
Target Start/End: Complemental strand, 35555943 - 35555842
Alignment:
Q  146 gtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacactacattt 245  Q
    ||||||||||||||||| |||| |||| ||| ||||||||||| |||||| ||||||||| |   |||||||||||  ||||||||||||| |||| |||    
T  35555943 gtcagtctccgtttaaccgatgctgatgtagccgttaagttgttgacttggatcaaaatgcttcattttaaaagctcaagggtgtcaaaacgctacgttt 35555844  T
Q  246 aa 247  Q
    ||    
T  35555843 aa 35555842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 235
Target Start/End: Original strand, 4276295 - 4276388
Alignment:
Q  142 tgctgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaa 235  Q
    |||||||||| ||| |||||||||||||||| |||  |||||||||| || ||  ||||||||| || ||||||||||||  ||||||||||||    
T  4276295 tgctgtcagtatccatttaactgatgttgatgtagcggttaagttgttgatttagatcaaaatggtgccttttaaaagctcgagggtgtcaaaa 4276388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 235
Target Start/End: Complemental strand, 33975057 - 33974968
Alignment:
Q  145 tgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaa 235  Q
    ||||||||||| |||||||||||||||| | | ||||||||||  | ||||||| |||| ||||  ||| ||| |||||||||||||||||    
T  33975057 tgtcagtctccatttaactgatgttgatgtggccgttaagttgctg-cttgaattaaaacgatgcgtttcaaaggctttagggtgtcaaaa 33974968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 14629411 - 14629468
Alignment:
Q  178 cgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaa 235  Q
    ||||||||||| || ||||||||||| | || |||||||||||| |||||||||||||    
T  14629411 cgttaagttgttgatttgaatcaaaacgctgccttttaaaagctctagggtgtcaaaa 14629468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 247
Target Start/End: Original strand, 24707583 - 24707672
Alignment:
Q  158 ttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacactacatttaa 247  Q
    |||| |||||||||| ||| |||||| |||| || ||  ||||||||| || |||| |||||||  ||||||||||||| ||||||||||    
T  24707583 ttaattgatgttgatgtagccgttaaattgttgatttagatcaaaatgttgcctttaaaaagctcgagggtgtcaaaacgctacatttaa 24707672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 247
Target Start/End: Original strand, 53783035 - 53783140
Alignment:
Q  142 tgctgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacactac 241  Q
    |||| |||||||| || |||| |||||||||  |||||||||||||| || ||| ||||||||| ||  |||||||||    ||||||||||||| ||||    
T  53783035 tgctatcagtctctgtgtaacagatgttgatgaagtcgttaagttgttgatttggatcaaaatgctgcattttaaaagaccgagggtgtcaaaacgctac 53783134  T
Q  242 atttaa 247  Q
     |||||    
T  53783135 gtttaa 53783140  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 21376967 - 21376890
Alignment:
Q  158 ttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaac 236  Q
    |||||||| |||||| || || ||||||||| | |||| ||||||| | ||||||||||||||| ||||||| ||||||    
T  21376967 ttaactgaggttgatgta-tccttaagttgttgtcttggatcaaaacgttgtcttttaaaagctctagggtgccaaaac 21376890  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 221
Target Start/End: Complemental strand, 3088064 - 3087987
Alignment:
Q  144 ctgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagct 221  Q
    |||| ||||| ||||||||||||  |||| ||| |||||||||||  |||||||  ||| || |||||||||||||||    
T  3088064 ctgttagtctgcgtttaactgatcctgatgtagccgttaagttgttaacttgaagaaaagtgttgtcttttaaaagct 3087987  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 31247302 - 31247363
Alignment:
Q  158 ttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaag 219  Q
    |||| ||||| |||| ||| ||||||||||| |||||| ||||||| | |||||||||||||    
T  31247302 ttaattgatgctgatgtagccgttaagttgttgacttggatcaaaacgttgtcttttaaaag 31247363  T

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Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 142 - 247
Target Start/End: Complemental strand, 36196468 - 36196363
Alignment:
Q  142 tgctgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacactac 241  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||| |||||| ||||||||| || ||||||||| ||  ||||||||||||| ||||    
T  36196468 tgctgtcagtctccgtttaactgatgctgatatagccgttaagttgttgacttggatcaaaatgctgccttttaaaaactcgagggtgtcaaaacgctac 36196369  T
Q  242 atttaa 247  Q
     |||||    
T  36196368 gtttaa 36196363  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 144 - 247
Target Start/End: Complemental strand, 20535922 - 20535819
Alignment:
Q  144 ctgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacactacat 243  Q
    |||||||||||| |||||||||||||||| ||| ||||||||| | |||||| |||||||||  | ||||||||||||  ||||||| |||||||||| |    
T  20535922 ctgtcagtctccatttaactgatgttgatgtagccgttaagttattgacttggatcaaaatgtagccttttaaaagctcgagggtgttaaaacactacgt 20535823  T
Q  244 ttaa 247  Q
    ||||    
T  20535822 ttaa 20535819  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 235
Target Start/End: Original strand, 19080790 - 19080881
Alignment:
Q  144 ctgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaa 235  Q
    ||||| |||||||||||| |||||||||| ||  ||||||||||| ||| || ||||||||  |||||||||||||||  ||||||||||||    
T  19080790 ctgtcggtctccgtttaattgatgttgatgtaaccgttaagttgttgacatggatcaaaatactgtcttttaaaagctcgagggtgtcaaaa 19080881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 11871699 - 11871621
Alignment:
Q  158 ttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaac 236  Q
    |||||||||| |||| |||||||||| |||| |||||  ||||||||| || ||||||||||||| |||||||||||||    
T  11871699 ttaactgatgctgatgtagtcgttaaattgttgactttgatcaaaatggtggcttttaaaagcttcagggtgtcaaaac 11871621  T

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Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 27893522 - 27893448
Alignment:
Q  145 tgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaag 219  Q
    |||||||||||||||||||||||||||| ||| |||||| |||| |||||| ||||||||| || | ||||||||    
T  27893522 tgtcagtctccgtttaactgatgttgatgtagccgttaaattgttgacttggatcaaaatgttgccatttaaaag 27893448  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 39301482 - 39301580
Alignment:
Q  149 agtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacactacatttaa 247  Q
    |||||||||||||||||||||||||||   |||||||||| |||||  ||||||||| |   ||| ||||| || ||||||||||||| |||| |||||    
T  39301482 agtctccgtttaactgatgttgatatatctgttaagttgttgacttagatcaaaatgtttcatttaaaaagtttgagggtgtcaaaacgctacgtttaa 39301580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 20535618 - 20535681
Alignment:
Q  158 ttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagct 221  Q
    ||||||||||||||| ||| ||||||||||| |||||| ||||||| | || ||||||||||||    
T  20535618 ttaactgatgttgatgtagccgttaagttgttgacttggatcaaaacgttgccttttaaaagct 20535681  T

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Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 142 - 247
Target Start/End: Complemental strand, 17180103 - 17180000
Alignment:
Q  142 tgctgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacactac 241  Q
    |||||| |||||||||||||  ||||||||| ||||||||||||||| |||||||||||||||| || ||||||||| ||  | ||||||||||||||||    
T  17180103 tgctgttagtctccgtttaa--gatgttgatgtagtcgttaagttgttgacttgaatcaaaatgctgccttttaaaaactcgatggtgtcaaaacactac 17180006  T
Q  242 atttaa 247  Q
    ||||||    
T  17180005 atttaa 17180000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 145 - 236
Target Start/End: Complemental strand, 28630587 - 28630496
Alignment:
Q  145 tgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaac 236  Q
    ||||||| ||||||||||||||| |||| ||||||||||||||| |||||| ||||||||| || |||||||||| |  |||||||||||||    
T  28630587 tgtcagtatccgtttaactgatgctgatgtagtcgttaagttgttgacttggatcaaaatgctgccttttaaaagttacagggtgtcaaaac 28630496  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 158 - 247
Target Start/End: Original strand, 10962914 - 10963003
Alignment:
Q  158 ttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacactacatttaa 247  Q
    |||||||||| |||| ||| ||||||||||| |||||| ||||||||| ||| |||||||||||||||| ||||||||| |||| |||||    
T  10962914 ttaactgatgctgatgtagccgttaagttgttgacttggatcaaaatgctgttttttaaaagctttaggatgtcaaaacgctacgtttaa 10963003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 247
Target Start/End: Original strand, 11527687 - 11527792
Alignment:
Q  142 tgctgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacactac 241  Q
    |||||||||| ||||||||| ||||| |||| ||||||||||||||| || ||| ||||||||| |  ||||||||||||| ||| ||||||||| ||||    
T  11527687 tgctgtcagtatccgtttaattgatgctgatgtagtcgttaagttgttgagttggatcaaaatgttaccttttaaaagcttaaggctgtcaaaacgctac 11527786  T
Q  242 atttaa 247  Q
     |||||    
T  11527787 ttttaa 11527792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 222
Target Start/End: Original strand, 9902072 - 9902139
Alignment:
Q  155 cgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctt 222  Q
    |||||||||||||||||  ||| | ||||||||| |||||| ||||||| | || |||||||||||||    
T  9902072 cgtttaactgatgttgaggtagccattaagttgttgacttggatcaaaacgctgccttttaaaagctt 9902139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 236
Target Start/End: Complemental strand, 9946652 - 9946585
Alignment:
Q  169 tgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaac 236  Q
    |||||||| |||||||||||  ||||| |||| |||| ||  |||||||||||| |||||||||||||    
T  9946652 tgatatagccgttaagttgttaacttggatcagaatgttgcattttaaaagcttcagggtgtcaaaac 9946585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 17179800 - 17179877
Alignment:
Q  158 ttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaac 236  Q
    |||||||||| |||| ||||||||||||||| |||||  ||| ||||| |  ||||||||||||  |||||||||||||    
T  17179800 ttaactgatgctgatgtagtcgttaagttgttgacttagatc-aaatgttaccttttaaaagctccagggtgtcaaaac 17179877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 203
Target Start/End: Complemental strand, 24139469 - 24139411
Alignment:
Q  145 tgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaa 203  Q
    |||||||||||||||| |||||| |||| ||| | ||||||||| |||||| |||||||    
T  24139469 tgtcagtctccgtttatctgatgctgatgtagccattaagttgttgacttggatcaaaa 24139411  T

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Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 145 - 247
Target Start/End: Complemental strand, 10686675 - 10686573
Alignment:
Q  145 tgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacactacatt 244  Q
    ||||||||||||||||||||||||||||  ||| || |||||||  ||||| ||||||||| |||||||||||||||  |||||||||||||||||| ||    
T  10686675 tgtcagtctccgtttaactgatgttgatgcagttgtgaagttgtttacttggatcaaaatgttgtcttttaaaagctcgagggtgtcaaaacactacgtt 10686576  T
Q  245 taa 247  Q
    |||    
T  10686575 taa 10686573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 236
Target Start/End: Original strand, 34254662 - 34254752
Alignment:
Q  145 tgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaac 236  Q
    ||||||| |||||||||||||||||||| |||||| |||||||| |||||| ||||||||| || ||||||||||||| | ||||| |||||    
T  34254662 tgtcagtatccgtttaactgatgttgatgtagtcg-taagttgttgacttggatcaaaatgctgccttttaaaagcttcatggtgttaaaac 34254752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 37663206 - 37663285
Alignment:
Q  142 tgctgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagct 221  Q
    ||||||||||||||||||||||||||||| | ||| || |||||||| | |||| ||||||||| |||||||||||||||    
T  37663206 tgctgtcagtctccgtttaactgatgttggtgtagccgataagttgttgtcttggatcaaaatgttgtcttttaaaagct 37663285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 236
Target Start/End: Original strand, 49650725 - 49650819
Alignment:
Q  142 tgctgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaac 236  Q
    |||||||| | || |||||||||||| |||| ||| ||||||||||| || ||| ||||||||| ||||||||||||| || |||||||||||||    
T  49650725 tgctgtcaatatctgtttaactgatgctgatgtagccgttaagttgttgatttggatcaaaatgttgtcttttaaaagtttcagggtgtcaaaac 49650819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 236
Target Start/End: Complemental strand, 4030710 - 4030623
Alignment:
Q  149 agtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaac 236  Q
    ||||||| ||||||||||| | |||||| ||||||||| | ||||| |||||||||  ||| |||||||||||| |||||||||||||    
T  4030710 agtctccatttaactgatgctaatataggcgttaagtttttgactttaatcaaaatactgtattttaaaagcttgagggtgtcaaaac 4030623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 158 - 247
Target Start/End: Original strand, 10686372 - 10686461
Alignment:
Q  158 ttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacactacatttaa 247  Q
    |||||||||| |||| ||| ||||||||||| |||||| ||||||||  || |||||||||||| | ||||||||||||| ||| |||||    
T  10686372 ttaactgatgctgatgtagccgttaagttgttgacttgtatcaaaatattgccttttaaaagctctggggtgtcaaaacattacgtttaa 10686461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 27351227 - 27351308
Alignment:
Q  158 ttaactgatgttgatatagtcgttaagtt---gtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaac 236  Q
    ||||||||||||||||||| |||||||||   || |||||||||||||||| || |||||||||| |  |||||||||||||    
T  27351227 ttaactgatgttgatatagccgttaagtttttgttgacttgaatcaaaatgttgccttttaaaagatacagggtgtcaaaac 27351308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 235
Target Start/End: Complemental strand, 4772607 - 4772517
Alignment:
Q  145 tgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaa 235  Q
    ||||||||| |||||||||||| ||||| |||  || ||||||| || ||  ||||||||| || ||||||||||||| ||||||||||||    
T  4772607 tgtcagtcttcgtttaactgatattgatgtagctgtgaagttgttgatttagatcaaaatgttgccttttaaaagcttgagggtgtcaaaa 4772517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 49650965 - 49650888
Alignment:
Q  158 ttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaa 235  Q
    |||| |||||||||| ||||||||||||||| |||||| ||||||| | || ||||||||| ||  ||||||||||||    
T  49650965 ttaattgatgttgatgtagtcgttaagttgttgacttggatcaaaacgctgccttttaaaatctccagggtgtcaaaa 49650888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 8902937 - 8903000
Alignment:
Q  158 ttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagct 221  Q
    |||||||||| |||| ||| ||||||||||| |||||| ||||||| |||| ||||||||||||    
T  8902937 ttaactgatgctgatgtagccgttaagttgttgacttggatcaaaacgatgccttttaaaagct 8903000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 236
Target Start/End: Complemental strand, 8903240 - 8903149
Alignment:
Q  145 tgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaac 236  Q
    |||||||||||||||| |||||||||||  || |||||| ||||  ||||| ||||||||| || |||||||||| |  ||||||| |||||    
T  8903240 tgtcagtctccgtttagctgatgttgatgaagccgttaaattgttaacttggatcaaaatggtgccttttaaaagttcgagggtgtaaaaac 8903149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 233
Target Start/End: Complemental strand, 29419004 - 29418918
Alignment:
Q  147 tcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaa 233  Q
    |||||||| || ||||| ||| |||| ||| ||||||||||| |||||| ||||||||  |||||||||||| ||  ||||||||||    
T  29419004 tcagtctctgtataactaatgctgatgtagccgttaagttgttgacttggatcaaaatactgtcttttaaaaactccagggtgtcaa 29418918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 34254962 - 34254885
Alignment:
Q  158 ttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaac 236  Q
    |||| ||||| ||| |||| ||||||||||| |||||| ||||||| | |||||||||||||||| | |||||||||||    
T  34254962 ttaattgatgctgaaatagccgttaagttgttgacttgtatcaaaacgctgtcttttaaaagcttca-ggtgtcaaaac 34254885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 27351492 - 27351419
Alignment:
Q  158 ttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtc 231  Q
    |||| ||||| |||| ||| ||||||||||| |||||  ||||||||| ||| ||||||||||| |||||||||    
T  27351492 ttaagtgatgctgatgtagccgttaagttgttgactttgatcaaaatgttgttttttaaaagctctagggtgtc 27351419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 39302480 - 39302530
Alignment:
Q  197 atcaaaatgatgtcttttaaaagctttagggtgtcaaaacactacatttaa 247  Q
    ||||||||| || ||||||||||||| ||||||||||||| |||| |||||    
T  39302480 atcaaaatgttgccttttaaaagcttcagggtgtcaaaacgctacgtttaa 39302530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 145 - 240
Target Start/End: Original strand, 20728691 - 20728785
Alignment:
Q  145 tgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacacta 240  Q
    ||||||||||||||||||||||| |||| ||||| ||||||||| |||||| ||||||| | |||||||||||||||  || ||||||||||||||    
T  20728691 tgtcagtctccgtttaactgatgctgatgtagtcattaagttgt-gacttggatcaaaacgctgtcttttaaaagctccagagtgtcaaaacacta 20728785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 158 - 247
Target Start/End: Original strand, 35190080 - 35190169
Alignment:
Q  158 ttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacactacatttaa 247  Q
    ||||||||||||||| ||||||||||||||| |||||| ||||||||| || |||| ||||||| ||||||||| |||| |||| |||||    
T  35190080 ttaactgatgttgatgtagtcgttaagttgttgacttggatcaaaatgttgcctttcaaaagctctagggtgtccaaacgctacgtttaa 35190169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 30738205 - 30738123
Alignment:
Q  158 ttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacacta 240  Q
    ||||||||||||||| ||| ||||||||||| |||||  |||||||| |||||||||||||| || ||||||||||| |||||    
T  30738205 ttaactgatgttgatttagccgttaagttgttgacttagatcaaaataatgtcttttaaaagtttaagggtgtcaaaccacta 30738123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 19278871 - 19278969
Alignment:
Q  149 agtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacactacatttaa 247  Q
    ||||||| ||||||||||| |||| | ||||||||||||| |||||| ||||||| | ||||||||||||| |  ||| ||||||||| |||| |||||    
T  19278871 agtctccttttaactgatgctgatgtcgtcgttaagttgttgacttggatcaaaacgttgtcttttaaaagttccaggatgtcaaaacgctacgtttaa 19278969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 247
Target Start/End: Original strand, 13543247 - 13543351
Alignment:
Q  142 tgctgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacactac 241  Q
    |||| ||||| ||||||||||| ||| |||| ||||||| ||||||| |||||| ||||||| | || |||||||||| || ||||||||||||| ||||    
T  13543247 tgctatcagtgtccgtttaacttatgctgatgtagtcgt-aagttgttgacttggatcaaaacgttgccttttaaaagtttcagggtgtcaaaacgctac 13543345  T
Q  242 atttaa 247  Q
     |||||    
T  13543346 gtttaa 13543351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 158 - 247
Target Start/End: Complemental strand, 13543550 - 13543461
Alignment:
Q  158 ttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacactacatttaa 247  Q
    |||| |||||||||| ||  ||||||||||| |||||| ||||||||| |||||||||||||||| | ||| |||||||| ||| |||||    
T  13543550 ttaattgatgttgatgtaaccgttaagttgttgacttggatcaaaatgttgtcttttaaaagcttcaaggtatcaaaacattacgtttaa 13543461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 38405519 - 38405439
Alignment:
Q  141 gtgctgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagct 221  Q
    ||||||||||||||||||||||| ||| |||| ||  |||||||||||  ||||| ||||||||| ||| |||||||||||    
T  38405519 gtgctgtcagtctccgtttaactaatgctgatgtaaccgttaagttgttaacttggatcaaaatgttgtattttaaaagct 38405439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 203
Target Start/End: Original strand, 35890929 - 35890987
Alignment:
Q  145 tgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaa 203  Q
    ||||||||||||||||||||||||| || | | ||||||||||| ||||||||||||||    
T  35890929 tgtcagtctccgtttaactgatgttaatgtggccgttaagttgttgacttgaatcaaaa 35890987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 36418342 - 36418283
Alignment:
Q  162 ctgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagct 221  Q
    |||||| |||| ||| ||||||||||| |||||||||||||| | |||||||||||||||    
T  36418342 ctgatgctgatgtagccgttaagttgttgacttgaatcaaaacgttgtcttttaaaagct 36418283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 1722669 - 1722746
Alignment:
Q  158 ttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaa 235  Q
    |||| ||||||| || ||| |||||| |||| |||||| ||||||| | || ||||||||||||| ||||||||||||    
T  1722669 ttaattgatgttaatgtagccgttaaattgttgacttggatcaaaacgctgccttttaaaagcttcagggtgtcaaaa 1722746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 247
Target Start/End: Complemental strand, 19279170 - 19279081
Alignment:
Q  158 ttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacactacatttaa 247  Q
    |||| |||||||||| |||| ||||||||||  ||||| ||||||| | ||  |||||||| ||  |||||||||||||| |||||||||    
T  19279170 ttaattgatgttgatgtagttgttaagttgttaacttggatcaaaacgttgcattttaaaatctccagggtgtcaaaacattacatttaa 19279081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 26275682 - 26275743
Alignment:
Q  174 tagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaa 235  Q
    |||||||||||||||  ||||  |||||||||||| |||||||||||| |||| ||||||||    
T  26275682 tagtcgttaagttgttaacttagatcaaaatgatgccttttaaaagctctaggatgtcaaaa 26275743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 35190370 - 35190293
Alignment:
Q  158 ttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaa 235  Q
    |||||||||| |||| |||  ||||| |||| |||||  ||||||||| || ||||||||||||| ||||||||||||    
T  35190370 ttaactgatgctgatttagcggttaatttgttgactttgatcaaaatgctgccttttaaaagcttcagggtgtcaaaa 35190293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 220
Target Start/End: Complemental strand, 5734941 - 5734868
Alignment:
Q  146 gtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagc 220  Q
    ||||||||| ||||||| ||||| ||| ||  ||||||||||| ||||| |||||||||| || |||||||||||    
T  5734941 gtcagtctctgtttaac-gatgtagatgtaaccgttaagttgttgacttaaatcaaaatgctgccttttaaaagc 5734868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 247
Target Start/End: Original strand, 18249145 - 18249223
Alignment:
Q  169 tgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacactacatttaa 247  Q
    |||| ||| |||| |||||| || ||| ||||||||| ||  ||||||||||| ||||||||||||||  |||||||||    
T  18249145 tgatgtagccgttgagttgttgatttggatcaaaatgctgcattttaaaagctctagggtgtcaaaacgttacatttaa 18249223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 30737916 - 30737978
Alignment:
Q  158 ttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagc 220  Q
    |||||| ||| |||| ||||||||||||||| |||||| ||||||||  ||| ||||||||||    
T  30737916 ttaacttatgctgatgtagtcgttaagttgttgacttggatcaaaatactgttttttaaaagc 30737978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 8408819 - 8408744
Alignment:
Q  147 tcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctt 222  Q
    |||||||| |||||||||||||||| |||| ||||||||||| |||||| ||||||||| ||||||||||||||||    
T  8408819 tcagtctctgtttaactgatgttgagatagccgttaagttgttgacttggatcaaaatgttgtcttttaaaagctt 8408744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 142 - 236
Target Start/End: Complemental strand, 31229732 - 31229638
Alignment:
Q  142 tgctgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaac 236  Q
    ||||| ||||||| |||||||| |||||||| ||||||||||||||| |||||||||||||||| |  |||| |||||||  |||||||||||||    
T  31229732 tgctgccagtctctgtttaactaatgttgatgtagtcgttaagttgttgacttgaatcaaaatgcttcctttcaaaagctcgagggtgtcaaaac 31229638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 52182116 - 52182053
Alignment:
Q  158 ttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagct 221  Q
    ||||||||||||||| ||| ||||||||||| ||||| ||||||||||||||||||||||||||    
T  52182116 ttaactgatgttgatgtagccgttaagttgttgacttaaatcaaaatgatgtcttttaaaagct 52182053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 158 - 247
Target Start/End: Original strand, 52181891 - 52181980
Alignment:
Q  158 ttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacactacatttaa 247  Q
    |||| |||||||||| ||||||||||||||| |||||  ||||||||| || ||||||||||||  ||||||||||||| |||| |||||    
T  52181891 ttaattgatgttgatgtagtcgttaagttgttgactttgatcaaaatgttgccttttaaaagctccagggtgtcaaaacgctacgtttaa 52181980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 52567859 - 52567937
Alignment:
Q  158 ttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaac 236  Q
    |||| |||||||||| ||||||||||||| | | |||| ||||||||| |||||||||||| ||| |||||||||||||    
T  52567859 ttaattgatgttgatgtagtcgttaagttattgtcttggatcaaaatgttgtcttttaaaaacttcagggtgtcaaaac 52567937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 52568149 - 52568058
Alignment:
Q  153 tccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacactacatttaa 247  Q
    |||||||||| ||||||||| ||| | ||||||||   ||||| ||||||||||||  ||||||||||| |||||||||||||| |||| |||||    
T  52568149 tccgtttaaccgatgttgatgtagccattaagttg---acttggatcaaaatgatgcgttttaaaagctctagggtgtcaaaacgctacgtttaa 52568058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 236
Target Start/End: Original strand, 19681367 - 19681442
Alignment:
Q  161 actgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaac 236  Q
    |||||||||||| ||| ||||||||||| |||||| |||| |||| |||||||||||||||  ||| |||||||||    
T  19681367 actgatgttgatgtagccgttaagttgttgacttggatcataatgttgtcttttaaaagctcgaggatgtcaaaac 19681442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 247
Target Start/End: Complemental strand, 44916278 - 44916179
Alignment:
Q  148 cagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacactacatttaa 247  Q
    ||||||||||||||||||||||||| | | ||||||||||| |||||  ||| ||||||||  ||| ||| ||| ||||  ||||||||||| |||||||    
T  44916278 cagtctccgtttaactgatgttgatgtggccgttaagttgttgactttgatcgaaatgatgcgtttcaaaggctctaggtagtcaaaacactgcatttaa 44916179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 19632204 - 19632106
Alignment:
Q  149 agtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacactacatttaa 247  Q
    ||||||| |||||||||||||||| ||| ||||||||||| |||| | ||||||||| |   |||||||||||  || |||||||||| |||| |||||    
T  19632204 agtctccatttaactgatgttgatgtagccgttaagttgttgactaggatcaaaatgttacattttaaaagctcaagagtgtcaaaactctacgtttaa 19632106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 247
Target Start/End: Complemental strand, 30543064 - 30542996
Alignment:
Q  179 gttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacactacatttaa 247  Q
    ||||| |||| ||||| |||||||| | || ||||||||||||| | |||||||||||| ||| |||||    
T  30543064 gttaaattgttgacttaaatcaaaacgttgacttttaaaagcttcatggtgtcaaaacattacgtttaa 30542996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 247
Target Start/End: Original strand, 9545 - 9650
Alignment:
Q  142 tgctgtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacactac 241  Q
    |||| ||||||||||||||||| |||||||| |||| |||||||||| |||||  ||||||||  || ||||||||||||  ||||||||||||| ||||    
T  9545 tgctatcagtctccgtttaactaatgttgatgtagttgttaagttgttgactttgatcaaaatattgccttttaaaagctcgagggtgtcaaaacgctac 9644  T
Q  242 atttaa 247  Q
     |||||    
T  9645 gtttaa 9650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 9839 - 9761
Alignment:
Q  169 tgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaacactacatttaa 247  Q
    |||| |||||||||  |||| |||||| ||||||| | |||||||||||||||  |||||||||||||  |||||||||    
T  9839 tgatgtagtcgttacattgttgacttggatcaaaacgctgtcttttaaaagctccagggtgtcaaaacgttacatttaa 9761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 28708 - 28783
Alignment:
Q  146 gtcagtctccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagct 221  Q
    |||||| |||||| ||||||||||||| ||| | ||||||||| |||||| |||| |||| || ||||||||||||    
T  28708 gtcagtatccgttaaactgatgttgatgtagccattaagttgttgacttggatcacaatgttgccttttaaaagct 28783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 29007 - 28930
Alignment:
Q  158 ttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagctttagggtgtcaaaac 236  Q
    |||| |||||||||| |||  |||||||||| || ||| ||||||| |||| ||||||||||| || ||||||||||||    
T  29007 ttaattgatgttgatgtagcggttaagttgttgatttggatcaaaacgatgccttttaaaagc-ttcgggtgtcaaaac 28930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0746 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0746
Description:

Target: scaffold0746; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 488 - 420
Alignment:
Q  153 tccgtttaactgatgttgatatagtcgttaagttgtggacttgaatcaaaatgatgtcttttaaaagct 221  Q
    ||||||||||| |||  ||| ||| ||||||||||| |||||| |||| |||| || ||||||||||||    
T  488 tccgtttaactaatgccgatgtagccgttaagttgttgacttggatcacaatgttgccttttaaaagct 420  T

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