View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1883-3-Insertion-4 (Length: 228)
Name: NF1883-3-Insertion-4
Description: 454-NF1883-3
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1883-3-Insertion-4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 46011352 - 46011582
Alignment:
| Q |
1 |
tttatcacctggggaatctgaaatatcagaattagtgaagctaattgctgagaaaaaa-tgaatgagaatcatgtattggaaaaa-tgatggaggaaggt |
98 |
Q |
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| T |
46011352 |
tttatcacctggggaatctgaaatatcagaattagtgaagctaattgctgagaaaaaaatgaacgagaatcatggattggaaaaaatgatggaggaaggt |
46011451 |
T |
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| Q |
99 |
gaaggaaa-gatgattttattgtttatggagcaaagttaacatttgtagatttggaagaaggtaatttttatggtgtaaagattaatgggcagaaaccaa |
197 |
Q |
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| T |
46011452 |
gaaggaaaagatgattttattgtttatggagcaaagttaacatttgtagatttggaagaaggtaatttttatggtgtaaagattaatgggcagaaaccaa |
46011551 |
T |
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| Q |
198 |
ttttggcaaattgtgattttcgtggtgtggg |
228 |
Q |
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| T |
46011552 |
ttttggcaaattgtgattttcgtggtgtggg |
46011582 |
T |
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Target: chr2 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 53 - 225
Target Start/End: Original strand, 15924455 - 15924629
Alignment:
| Q |
53 |
aaaaaatgaatgagaatcatgtattggaaaaat-gatggaggaaggtgaaggaaa-gatgattttattgtttatggagcaaagttaacatttgtagattt |
150 |
Q |
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| T |
15924455 |
aaaaaattaatgagaattatgcattggaaaaattggtggagaaaggtgatggaaaagatgatttttttgtatatggagcaaagttaacatttgtagactt |
15924554 |
T |
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| Q |
151 |
ggaagaaggtaatttttatggtgtaaagattaatgggcagaaaccaattttggcaaattgtgattttcgtggtgt |
225 |
Q |
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| T |
15924555 |
ggaagaagctgatttatatggtgtaaagcttaatggaaagaaacctattagggcgaattgtgatttacgtggtgt |
15924629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 53 - 225
Target Start/End: Original strand, 13116273 - 13116447
Alignment:
| Q |
53 |
aaaaaatgaatgagaatcatgtattggaaaaa-tgatggaggaaggtgaagg-aaagatgattttattgtttatggagcaaagttaacatttgtagattt |
150 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||| |||||||| ||||| ||||||| ||||||||||| ||||||||||||||||| || |
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| T |
13116273 |
aaaaaatgaatgagaatcatgtattggaaaaaattgtggaggacggtgaaggcaaagagcattttatagtttatggagctaagttaacatttgtagactt |
13116372 |
T |
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| Q |
151 |
ggaagaaggtaatttttatggtgtaaagattaatgggcagaaaccaattttggcaaattgtgattttcgtggtgt |
225 |
Q |
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| T |
13116373 |
ggaagaggctgatttttacgagataaagattaatggacagaaacccattatggtaaattgtgatttccgcggtgt |
13116447 |
T |
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