View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071-Insertion-10 (Length: 474)
Name: NF2071-Insertion-10
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071-Insertion-10 |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 48 - 448
Target Start/End: Original strand, 40053268 - 40053676
Alignment:
| Q |
48 |
ttagggatcaagaagcttgtcaaacagatttgaaatacgataaactttcatacgtgaataaaagtaatatagttctaatgctatgttaagacatacaccg |
147 |
Q |
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| T |
40053268 |
ttagggatcaagaagtttgtcaaacagatttgaaatacgataaactttcatacgtgaataaaaataatatagttctaatgctatgttaagacatacaccg |
40053367 |
T |
|
| Q |
148 |
tacatattaacatagttagagaagatttaagacggataaattgagacagatgctcagacacaagagctgatactgtagaagcaaaactcatagttcctct |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40053368 |
tacatattaacatagttagagaagatttaagacggataaattgagacagatgctcagacacaagagctgatattgtagaagcaaaactcatagttcctct |
40053467 |
T |
|
| Q |
248 |
tagtataagaaaaattggctacatagcgtc--------cttgtttctagcaacataaattttgcctaaaatctattcataattctgcgtgataattttca |
339 |
Q |
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| T |
40053468 |
tagtataagaaaaattggctacatagcgtccttgtttgcttgtttctagcaacataaattttgcctaaaatctattcctaagactgcgtgataattttga |
40053567 |
T |
|
| Q |
340 |
agttatgtttgttcctaagtatacattagtattgccnnnnnnnnnnnnnataaagaagtaagtgaaacaaagtttcaaatctatcaactaagtccctctt |
439 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40053568 |
agttatgtttgttcctaagtatacattagtattgccttttttctttcttataaagaagtaagtgaaacaaagtttcaaatctatcaactaagtccctctt |
40053667 |
T |
|
| Q |
440 |
agtaccccc |
448 |
Q |
| |
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|
| T |
40053668 |
agtaccccc |
40053676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 216 - 315
Target Start/End: Complemental strand, 49107749 - 49107642
Alignment:
| Q |
216 |
gatactgtagaagcaaaactcatagttcctcttagtataagaaaaattggctacatagcgtccttg--------tttctagcaacataaattttgcctaa |
307 |
Q |
| |
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|||| ||| ||| |||||||||||||||||||||||||||| ||| ||||||||||||| |||||| ||||||||||||| |||||||| ||| |
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| T |
49107749 |
gatattgttgaaccaaaactcatagttcctcttagtataagcaaacttggctacatagcatccttgtttgcttctttctagcaacattaattttgcataa |
49107650 |
T |
|
| Q |
308 |
aatctatt |
315 |
Q |
| |
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|||||||| |
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| T |
49107649 |
aatctatt |
49107642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 254
Target Start/End: Complemental strand, 27801106 - 27801054
Alignment:
| Q |
203 |
agacacaagagctgatact-gtagaagcaaaactcatagttcctcttagtata |
254 |
Q |
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|||||||||||||||| | |||||||||||||||| |||||||||||||||| |
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| T |
27801106 |
agacacaagagctgatgttagtagaagcaaaactcaaagttcctcttagtata |
27801054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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