View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071-Insertion-12 (Length: 400)
Name: NF2071-Insertion-12
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071-Insertion-12 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 63 - 386
Target Start/End: Complemental strand, 32441042 - 32440719
Alignment:
| Q |
63 |
atatgatttgtggtagaactacgcacaaaaggactttgtcaacaagtaatgctaaagagagaaaattgaaccaaaacgtagtggcgtcaaaatcccacta |
162 |
Q |
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| T |
32441042 |
atatgatttgtggtagaactacgcatagaaggactttgtcaacaagtaatgctaaagagagaaaattgaaccaaaacgtagcggcgtcaaaatcccacta |
32440943 |
T |
|
| Q |
163 |
ctaccaagggagtaaacacgtgataggggttacacacaatagtatgtaggccaagttgtttgccaaataggcaataatcacactatggtcatttatgcat |
262 |
Q |
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| T |
32440942 |
ctaccaagggagtaaacacgtaataggggttacacacaacagtatgtaggccacgttgtttgccaaataggcaataatcacactatggtcatttatgcat |
32440843 |
T |
|
| Q |
263 |
tttttggtgtagctcaaaattcaaaacaactgtacctgacgctttacaaagttcctccctcaaagttaatcacttaaaacaaatggaatgacgattaaga |
362 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32440842 |
tttttggtgtagctcaaaattcaaaacaactgtacctaacgctctacaaagttcctccctcaaagttaatcacttaaaacaaatgaaatgacgattaaga |
32440743 |
T |
|
| Q |
363 |
aaacacatccgacctcgtcttaat |
386 |
Q |
| |
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| T |
32440742 |
aaacacatccgacctcgtcttaat |
32440719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 32441262 - 32441219
Alignment:
| Q |
8 |
gacacattacccacgacctatgctctcagtgccaataattgtta |
51 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32441262 |
gacacattacccacgacctatgcttggagtgccaataattgtta |
32441219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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