View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071-Insertion-15 (Length: 293)
Name: NF2071-Insertion-15
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071-Insertion-15 |
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| [»] chr5 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 8 - 293
Target Start/End: Original strand, 27559795 - 27560080
Alignment:
| Q |
8 |
cttttcactacttagaacaacaagtccaataataacattaactagactaaactctgccactactgaacagcctctgataagcatacctttttctgatgat |
107 |
Q |
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| T |
27559795 |
cttttcattacttagaacaacaagtccaataataacattaactagactaaactctgccactactgaacaacctctgataagcatacctttttctgatgat |
27559894 |
T |
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| Q |
108 |
cctccaggccatacattcccagaacaaattccaactcctgattctcctcctgtaacttttcaatctgtaacaaaacaccttaatgagttgtttgaaatta |
207 |
Q |
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| T |
27559895 |
cctccaggccatacatttccagaacaaattccaactcctgattctcctcctgtaacttttcaatctgtaacaaaacaccttaatgagttgtttgaaatta |
27559994 |
T |
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| Q |
208 |
tagacaatcttgaaggcctctaaaatcacaatgcagataatgtttgagaaatatggaaagtataggagcagatacacatgcaaaac |
293 |
Q |
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| T |
27559995 |
tagacaatcttgaaggcctctaaaatcacaatgcagataatgtttgagaaatatggaaagtataggagcagatacacatgcaaaac |
27560080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 20 - 293
Target Start/End: Original strand, 36667371 - 36667642
Alignment:
| Q |
20 |
tagaacaacaagtccaataataacattaactagactaaactctgccactactgaacagcctctgataagcatacctttttctgatgatcctccaggccat |
119 |
Q |
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| T |
36667371 |
tagaataacgagtccaataattacattaactagactaaactctgccactactgaacaacttcagatcagcatacctttt-ctgataatcctccagaccat |
36667469 |
T |
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| Q |
120 |
acattcccagaacaaattccaactcctgattctcctcctgtaacttttcaatctgtaacaaaacaccttaatgagttgtttgaaattatagacaatcttg |
219 |
Q |
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| T |
36667470 |
acatatccaaaacaaattctaactcctggttctcctcctgtaacttttcaatctgtaacaaaacaccttaatgagttgtttgaaattagagacaatctt- |
36667568 |
T |
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| Q |
220 |
aaggcctctaaaatcacaatgcagataatgtttgagaaatatggaaagtataggagcagatacacatgcaaaac |
293 |
Q |
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| T |
36667569 |
aaggcctctaaaatcagaatgcagataatgtttgagaatcatggaaagtatagttgcagatacacatgcaaaac |
36667642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 20 - 293
Target Start/End: Original strand, 29409207 - 29409484
Alignment:
| Q |
20 |
tagaacaacaagtccaataataacattaactagactaaactctgccactactgaacagcctctgataagcatacctttttctgatgatcctccaggccat |
119 |
Q |
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| T |
29409207 |
tagaataacaagtcaaaaaattacattaactagactaagctctgccactactgaacaaccccagatcagcatacctttt-ctgataatcttctaggccat |
29409305 |
T |
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| Q |
120 |
acattcccagaacaaattccaactcctgattctcctcctgtaacttttcaatctgtaacaaaacaccttaatgagttgtttgaaa-----ttatagacaa |
214 |
Q |
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| T |
29409306 |
acatatccaaaacaaattctaactcccgattctcctcctgtaacttttcaatctgtaacaaaacatcttaatgagttggttgaaaattagttatagacaa |
29409405 |
T |
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| Q |
215 |
tcttgaaggcctctaaaatcacaatgcagataatgtttgagaaatatggaaagtataggagcagatacacatgcaaaac |
293 |
Q |
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| T |
29409406 |
tcttgaaggccactaaaatcataatgcatataatgtttgagaatcatggaaaatataggtgcagatacacaagcaaaac |
29409484 |
T |
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