View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2071-Insertion-20 (Length: 167)

Name: NF2071-Insertion-20
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2071-Insertion-20
NF2071-Insertion-20
[»] chr4 (10 HSPs)
chr4 (63-137)||(45895041-45895115)
chr4 (8-63)||(39121129-39121184)
chr4 (11-63)||(34411322-34411374)
chr4 (10-65)||(36626113-36626168)
chr4 (10-65)||(38236267-38236322)
chr4 (24-66)||(28440456-28440498)
chr4 (10-63)||(53062069-53062122)
chr4 (10-61)||(34413059-34413110)
chr4 (24-63)||(41326544-41326583)
chr4 (10-65)||(56052726-56052781)
[»] chr1 (12 HSPs)
chr1 (8-63)||(51048182-51048237)
chr1 (10-69)||(29733290-29733349)
chr1 (10-63)||(10617323-10617376)
chr1 (9-66)||(46085518-46085575)
chr1 (10-65)||(30724585-30724640)
chr1 (10-65)||(39935292-39935347)
chr1 (10-60)||(27803232-27803282)
chr1 (10-63)||(50372773-50372826)
chr1 (10-66)||(2167793-2167849)
chr1 (10-66)||(23201998-23202054)
chr1 (10-66)||(38674166-38674222)
chr1 (10-61)||(30196304-30196355)
[»] chr3 (7 HSPs)
chr3 (10-62)||(18371084-18371136)
chr3 (10-68)||(4987002-4987060)
chr3 (7-65)||(41766714-41766772)
chr3 (24-63)||(39197963-39198002)
chr3 (10-63)||(52099830-52099883)
chr3 (10-62)||(38888485-38888537)
chr3 (24-63)||(43659039-43659078)
[»] chr8 (8 HSPs)
chr8 (10-63)||(43325450-43325503)
chr8 (10-65)||(9636294-9636349)
chr8 (10-62)||(22914528-22914580)
chr8 (24-67)||(33099699-33099742)
chr8 (20-65)||(25980849-25980894)
chr8 (10-66)||(26748040-26748096)
chr8 (24-63)||(8747881-8747920)
chr8 (10-61)||(28860359-28860410)
[»] chr7 (11 HSPs)
chr7 (9-66)||(34996831-34996888)
chr7 (10-63)||(37031203-37031256)
chr7 (10-67)||(41816527-41816584)
chr7 (10-66)||(10048273-10048329)
chr7 (10-65)||(44062988-44063043)
chr7 (10-64)||(40091004-40091058)
chr7 (10-63)||(46290421-46290474)
chr7 (11-63)||(35396005-35396057)
chr7 (24-63)||(20383937-20383976)
chr7 (8-63)||(33614081-33614136)
chr7 (22-61)||(43051736-43051775)
[»] chr2 (9 HSPs)
chr2 (10-65)||(363045-363100)
chr2 (10-65)||(41322053-41322108)
chr2 (10-63)||(38376521-38376574)
chr2 (9-44)||(1775599-1775634)
chr2 (24-62)||(4843470-4843508)
chr2 (22-72)||(39640445-39640495)
chr2 (10-63)||(20298220-20298273)
chr2 (10-63)||(20354868-20354921)
chr2 (10-63)||(39676228-39676281)
[»] chr6 (2 HSPs)
chr6 (11-57)||(10364947-10364993)
chr6 (10-60)||(5492382-5492432)
[»] chr5 (10 HSPs)
chr5 (10-63)||(17888367-17888420)
chr5 (24-80)||(27878578-27878634)
chr5 (7-69)||(8223806-8223868)
chr5 (8-62)||(9686577-9686631)
chr5 (9-62)||(1157066-1157119)
chr5 (10-63)||(38503511-38503564)
chr5 (10-66)||(39039800-39039856)
chr5 (8-63)||(9780161-9780216)
chr5 (10-65)||(11447314-11447369)
chr5 (11-66)||(19962472-19962527)
[»] scaffold0031 (2 HSPs)
scaffold0031 (25-68)||(105522-105565)
scaffold0031 (10-61)||(1486-1537)


Alignment Details
Target: chr4 (Bit Score: 71; Significance: 2e-32; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 63 - 137
Target Start/End: Original strand, 45895041 - 45895115
Alignment:
Q  63 ttagtgtgtaaaagaagattttgtagttaattaaaagatatactcttattaattccaatgctgttgtgtatatta 137  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  45895041 ttagtgtgtaaaagaagattttgtagttaattaaaagaaatactcttattaattccaatgctgttgtgtatatta 45895115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 39121184 - 39121129
Alignment:
Q  8 attctctcttaccaacttctctctttacaatttctcttctataccaaacacaccct 63  Q
    ||||||||||  ||||||||||||||||||||||||||||| | |||||| |||||    
T  39121184 attctctcttttcaacttctctctttacaatttctcttctaaatcaaacataccct 39121129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 34411374 - 34411322
Alignment:
Q  11 ctctcttaccaacttctctctttacaatttctcttctataccaaacacaccct 63  Q
    |||||||||| | ||||||||| |||| |||||||| ||||||||||||||||    
T  34411374 ctctcttacctatttctctcttcacaacttctcttccataccaaacacaccct 34411322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 36626168 - 36626113
Alignment:
Q  10 tctctcttaccaacttctctctttacaatttctcttctataccaaacacaccctta 65  Q
    ||||||||| ||||||||||||| ||||| ||||||| |  |||||||||||||||    
T  36626168 tctctcttagcaacttctctcttcacaatctctcttccaatccaaacacaccctta 36626113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 38236267 - 38236322
Alignment:
Q  10 tctctcttaccaacttctctctttacaatttctcttctataccaaacacaccctta 65  Q
    ||||||||  ||||||||||||||| || |||||| ||| ||||||||||||||||    
T  38236267 tctctcttcacaacttctctctttataacttctctcctaaaccaaacacaccctta 38236322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 28440498 - 28440456
Alignment:
Q  24 ttctctctttacaatttctcttctataccaaacacacccttag 66  Q
    ||||||||| |||||||||||| || |||||||||||||||||    
T  28440498 ttctctcttcacaatttctcttgtaaaccaaacacacccttag 28440456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 53062122 - 53062069
Alignment:
Q  10 tctctcttaccaacttctctctttacaatttctcttctataccaaacacaccct 63  Q
    ||||||||||  | ||||||||| |||| |||||||||| ||||||||||||||    
T  53062122 tctctcttacttatttctctcttcacaacttctcttctaaaccaaacacaccct 53062069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 34413059 - 34413110
Alignment:
Q  10 tctctcttaccaacttctctctttacaatttctcttctataccaaacacacc 61  Q
    ||||||||||| | ||||||||| |||| |||||||||  ||||||||||||    
T  34413059 tctctcttacctatttctctcttcacaacttctcttcttaaccaaacacacc 34413110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 41326583 - 41326544
Alignment:
Q  24 ttctctctttacaatttctcttctataccaaacacaccct 63  Q
    ||||||||| |||| |||||||||| ||||||||||||||    
T  41326583 ttctctcttcacaacttctcttctaaaccaaacacaccct 41326544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 56052726 - 56052781
Alignment:
Q  10 tctctcttaccaacttctctctttacaatttctcttctataccaaacacaccctta 65  Q
    ||||||| ||| | ||||||||| |||||||||||||   ||||||||||||||||    
T  56052726 tctctctcacctatttctctcttcacaatttctcttcataaccaaacacaccctta 56052781  T

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Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 51048182 - 51048237
Alignment:
Q  8 attctctcttaccaacttctctctttacaatttctcttctataccaaacacaccct 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51048182 attctctcttaccaacttctctctttacaatttctcttctataccaaacacaccct 51048237  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 29733290 - 29733349
Alignment:
Q  10 tctctcttaccaacttctctctttacaatttctcttctataccaaacacacccttagtgt 69  Q
    ||||||||||| | ||||||||| |||| |||||||| ||||||||||||||||||||||    
T  29733290 tctctcttacctatttctctcttcacaacttctcttccataccaaacacacccttagtgt 29733349  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 10617323 - 10617376
Alignment:
Q  10 tctctcttaccaacttctctctttacaatttctcttctataccaaacacaccct 63  Q
    ||||||||||| | ||||||||| |||| |||||||| ||||||||||||||||    
T  10617323 tctctcttacctatttctctcttcacaacttctcttccataccaaacacaccct 10617376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 46085575 - 46085518
Alignment:
Q  9 ttctctcttaccaacttctctctttacaatttctcttctataccaaacacacccttag 66  Q
    |||||||||||| | ||||||||| | || |||||||||| |||||||||||||||||    
T  46085575 ttctctcttacctatttctctcttcataacttctcttctaaaccaaacacacccttag 46085518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 30724640 - 30724585
Alignment:
Q  10 tctctcttaccaacttctctctttacaatttctcttctataccaaacacaccctta 65  Q
    ||||||| ||| | |||||||||||||| |||||||| | ||||||||||||||||    
T  30724640 tctctctcacctatttctctctttacaacttctcttccaaaccaaacacaccctta 30724585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 39935347 - 39935292
Alignment:
Q  10 tctctcttaccaacttctctctttacaatttctcttctataccaaacacaccctta 65  Q
    ||||||||  |||||||||||||||||| |||| | ||| ||||||||||||||||    
T  39935347 tctctcttcacaacttctctctttacaacttctatcctaaaccaaacacaccctta 39935292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 27803232 - 27803282
Alignment:
Q  10 tctctcttaccaacttctctctttacaatttctcttctataccaaacacac 60  Q
    ||||||| ||| | |||||||||||||| |||||||||| |||||||||||    
T  27803232 tctctctcacctatttctctctttacaacttctcttctaaaccaaacacac 27803282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 50372826 - 50372773
Alignment:
Q  10 tctctcttaccaacttctctctttacaatttctcttctataccaaacacaccct 63  Q
    ||||| ||||| | ||||||||| |||| |||||||||| ||||||||||||||    
T  50372826 tctctattacctatttctctcttcacaaattctcttctaaaccaaacacaccct 50372773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 2167793 - 2167849
Alignment:
Q  10 tctctcttaccaacttctctctttacaatttctcttctataccaaacacacccttag 66  Q
    ||||||| ||| | ||||||||| |||| |||||||| | |||||||||||||||||    
T  2167793 tctctctcacctatttctctcttcacaacttctcttccaaaccaaacacacccttag 2167849  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 23201998 - 23202054
Alignment:
Q  10 tctctcttaccaacttctctctttacaatttctcttctataccaaacacacccttag 66  Q
    ||||||||||| | ||||||||| |||| |||||||| | |||||||| ||||||||    
T  23201998 tctctcttacctatttctctcttcacaacttctcttccaaaccaaacatacccttag 23202054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 38674222 - 38674166
Alignment:
Q  10 tctctcttaccaacttctctctttacaatttctcttctataccaaacacacccttag 66  Q
    ||||||||||| | ||||||||| |||| |||||||||| | ||||||||| |||||    
T  38674222 tctctcttacctatttctctcttcacaacttctcttctacatcaaacacactcttag 38674166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 30196304 - 30196355
Alignment:
Q  10 tctctcttaccaacttctctctttacaatttctcttctataccaaacacacc 61  Q
    ||||||||||||||||||||||| |||| || |||||   ||||||||||||    
T  30196304 tctctcttaccaacttctctcttcacaacttatcttcctaaccaaacacacc 30196355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 18371084 - 18371136
Alignment:
Q  10 tctctcttaccaacttctctctttacaatttctcttctataccaaacacaccc 62  Q
    ||||||||||| ||||||||||| |||| ||||||||||||||||||||||||    
T  18371084 tctctcttacctacttctctcttcacaacttctcttctataccaaacacaccc 18371136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 4987002 - 4987060
Alignment:
Q  10 tctctcttaccaacttctctctttacaatttctcttctataccaaacacacccttagtg 68  Q
    ||||||||||| |||||||||||  ||| |||||||| | |||||||||||||||||||    
T  4987002 tctctcttacctacttctctcttctcaacttctcttccaaaccaaacacacccttagtg 4987060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 41766714 - 41766772
Alignment:
Q  7 aattctctcttaccaacttctctctttacaatttctcttctataccaaacacaccctta 65  Q
    |||| ||||||||| ||||||||||| |||||||||||||   ||||||||||||||||    
T  41766714 aattatctcttacctacttctctcttcacaatttctcttcacaaccaaacacaccctta 41766772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 39197963 - 39198002
Alignment:
Q  24 ttctctctttacaatttctcttctataccaaacacaccct 63  Q
    |||||||||||||| |||||||||| ||||||||||||||    
T  39197963 ttctctctttacaacttctcttctaaaccaaacacaccct 39198002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 52099830 - 52099883
Alignment:
Q  10 tctctcttaccaacttctctctttacaatttctcttctataccaaacacaccct 63  Q
    ||||||||||| | || |||||| |||| |||||||||| ||||||||||||||    
T  52099830 tctctcttacctatttttctcttcacaacttctcttctaaaccaaacacaccct 52099883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 38888485 - 38888537
Alignment:
Q  10 tctctcttaccaacttctctctttacaatttctcttctataccaaacacaccc 62  Q
    ||||||||||  | |||||||||| |||||||||||||  |||||||||||||    
T  38888485 tctctcttacttatttctctcttttcaatttctcttctgaaccaaacacaccc 38888537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 43659078 - 43659039
Alignment:
Q  24 ttctctctttacaatttctcttctataccaaacacaccct 63  Q
    ||||||||| |||| |||||||||| ||||||||||||||    
T  43659078 ttctctcttcacaacttctcttctaaaccaaacacaccct 43659039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.0000000000009; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 43325503 - 43325450
Alignment:
Q  10 tctctcttaccaacttctctctttacaatttctcttctataccaaacacaccct 63  Q
    ||||||||||| ||||||||||| |||| |||||||||| ||||||||||||||    
T  43325503 tctctcttacctacttctctcttcacaacttctcttctaaaccaaacacaccct 43325450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 9636294 - 9636349
Alignment:
Q  10 tctctcttaccaacttctctctttacaatttctcttctataccaaacacaccctta 65  Q
    ||||||||||| |||||||||||  ||| |||||||||||||||||||||| ||||    
T  9636294 tctctcttacctacttctctcttcgcaacttctcttctataccaaacacactctta 9636349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 22914528 - 22914580
Alignment:
Q  10 tctctcttaccaacttctctctttacaatttctcttctataccaaacacaccc 62  Q
    ||||||||||| | |||||||||||||  |||||||||| |||||||||||||    
T  22914528 tctctcttacctatttctctctttacatcttctcttctacaccaaacacaccc 22914580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 33099699 - 33099742
Alignment:
Q  24 ttctctctttacaatttctcttctataccaaacacacccttagt 67  Q
    ||||||||| |||| |||||||||| ||||||||||||||||||    
T  33099699 ttctctcttcacaacttctcttctaaaccaaacacacccttagt 33099742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 25980849 - 25980894
Alignment:
Q  20 caacttctctctttacaatttctcttctataccaaacacaccctta 65  Q
    ||||||||||||| ||||| ||||||| | ||||||||||||||||    
T  25980849 caacttctctcttcacaatctctcttccaaaccaaacacaccctta 25980894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 26748040 - 26748096
Alignment:
Q  10 tctctcttaccaacttctctctttacaatttctcttctataccaaacacacccttag 66  Q
    ||||||||||| | |||||||||| ||| ||||||||   |||||||||||||||||    
T  26748040 tctctcttacctatttctctcttttcaacttctcttccgaaccaaacacacccttag 26748096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 8747920 - 8747881
Alignment:
Q  24 ttctctctttacaatttctcttctataccaaacacaccct 63  Q
    ||||||||| |||||||||||| || ||||||||||||||    
T  8747920 ttctctcttcacaatttctcttgtaaaccaaacacaccct 8747881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 28860410 - 28860359
Alignment:
Q  10 tctctcttaccaacttctctctttacaatttctcttctataccaaacacacc 61  Q
    ||||||||||| |||| |||||| |||| || ||||||| ||||||||||||    
T  28860410 tctctcttacctacttatctcttcacaacttgtcttctacaccaaacacacc 28860359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.0000000000009; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 34996831 - 34996888
Alignment:
Q  9 ttctctcttaccaacttctctctttacaatttctcttctataccaaacacacccttag 66  Q
    |||||||| ||| | ||||||||| |||| ||||||||||||||||||||||||||||    
T  34996831 ttctctctcacctatttctctcttcacaacttctcttctataccaaacacacccttag 34996888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 37031256 - 37031203
Alignment:
Q  10 tctctcttaccaacttctctctttacaatttctcttctataccaaacacaccct 63  Q
    ||||||||||| | |||||||||||||| |||||||||| ||||||||||||||    
T  37031256 tctctcttacctatttctctctttacaacttctcttctacaccaaacacaccct 37031203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 41816584 - 41816527
Alignment:
Q  10 tctctcttaccaacttctctctttacaatttctcttctataccaaacacacccttagt 67  Q
    ||||||||||| | ||||||||| |||| ||||||| || ||||||||||||||||||    
T  41816584 tctctcttacctatttctctcttcacaacttctcttttaaaccaaacacacccttagt 41816527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 10048273 - 10048329
Alignment:
Q  10 tctctcttaccaacttctctctttacaatttctcttctataccaaacacacccttag 66  Q
    ||||||||||| | ||||||||| |||| ||||||| || |||||||||||||||||    
T  10048273 tctctcttacctatttctctcttcacaacttctcttttaaaccaaacacacccttag 10048329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 44062988 - 44063043
Alignment:
Q  10 tctctcttaccaacttctctctttacaatttctcttctataccaaacacaccctta 65  Q
    ||||||| ||| | || |||||| ||||||||||||||| ||||||||||||||||    
T  44062988 tctctctcacctatttttctcttcacaatttctcttctaaaccaaacacaccctta 44063043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 40091058 - 40091004
Alignment:
Q  10 tctctcttaccaacttctctctttacaatttctcttctataccaaacacaccctt 64  Q
    ||||||||||| | || |||||| |||| ||||||||||||||||||| ||||||    
T  40091058 tctctcttacctatttatctcttcacaacttctcttctataccaaacataccctt 40091004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 46290474 - 46290421
Alignment:
Q  10 tctctcttaccaacttctctctttacaatttctcttctataccaaacacaccct 63  Q
    ||||||||||| | ||||||||| |||| |||||||||| |||||||| |||||    
T  46290474 tctctcttacctatttctctcttcacaacttctcttctacaccaaacagaccct 46290421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 35396057 - 35396005
Alignment:
Q  11 ctctcttaccaacttctctctttacaatttctcttctataccaaacacaccct 63  Q
    |||||| ||| | |||||||||||||||||||||||   ||||||||||||||    
T  35396057 ctctctcacctatttctctctttacaatttctcttcataaccaaacacaccct 35396005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 20383937 - 20383976
Alignment:
Q  24 ttctctctttacaatttctcttctataccaaacacaccct 63  Q
    ||||||||| |||| |||||||||| ||||||||||||||    
T  20383937 ttctctcttcacaacttctcttctaaaccaaacacaccct 20383976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 33614136 - 33614081
Alignment:
Q  8 attctctcttaccaacttctctctttacaatttctcttctataccaaacacaccct 63  Q
    ||||||||||||  | ||||||||| |||| ||||||| || ||||||||||||||    
T  33614136 attctctcttacatatttctctcttcacaacttctcttttaaaccaaacacaccct 33614081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 43051775 - 43051736
Alignment:
Q  22 acttctctctttacaatttctcttctataccaaacacacc 61  Q
    ||||||||||| |||||||||||| || ||||||||||||    
T  43051775 acttctctcttcacaatttctcttataaaccaaacacacc 43051736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 363045 - 363100
Alignment:
Q  10 tctctcttaccaacttctctctttacaatttctcttctataccaaacacaccctta 65  Q
    ||||||| ||||||||||||||| ||||| ||||||||| |||||||| |||||||    
T  363045 tctctctcaccaacttctctcttcacaatctctcttctaaaccaaacataccctta 363100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 41322053 - 41322108
Alignment:
Q  10 tctctcttaccaacttctctctttacaatttctcttctataccaaacacaccctta 65  Q
    ||||||||||| | ||||||||| |||| |||||||||| ||||||||||||||||    
T  41322053 tctctcttacctatttctctcttcacaacttctcttctaaaccaaacacaccctta 41322108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 38376521 - 38376574
Alignment:
Q  10 tctctcttaccaacttctctctttacaatttctcttctataccaaacacaccct 63  Q
    ||||||||||| | ||||||||| |||| |||||||||| ||||||||||||||    
T  38376521 tctctcttacctatttctctcttcacaacttctcttctacaccaaacacaccct 38376574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 1775634 - 1775599
Alignment:
Q  9 ttctctcttaccaacttctctctttacaatttctct 44  Q
    ||||||||||||||||||||| ||||||||||||||    
T  1775634 ttctctcttaccaacttctctttttacaatttctct 1775599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 4843470 - 4843508
Alignment:
Q  24 ttctctctttacaatttctcttctataccaaacacaccc 62  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  4843470 ttctctcttcacaatttctcttctaaaccaaacacaccc 4843508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 39640495 - 39640445
Alignment:
Q  22 acttctctctttacaatttctcttctataccaaacacacccttagtgtgta 72  Q
    ||||||||||| |||| ||||||| || |||||||||||||| ||||||||    
T  39640495 acttctctcttcacaacttctcttttaaaccaaacacaccctaagtgtgta 39640445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 20298273 - 20298220
Alignment:
Q  10 tctctcttaccaacttctctctttacaatttctcttctataccaaacacaccct 63  Q
    ||||||||||| ||||||||||| |||||||||||||   |||||| |||||||    
T  20298273 tctctcttacctacttctctcttcacaatttctcttcgtaaccaaatacaccct 20298220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 20354921 - 20354868
Alignment:
Q  10 tctctcttaccaacttctctctttacaatttctcttctataccaaacacaccct 63  Q
    ||||||||||| |||||||| || |||||||||||||   ||||||||||||||    
T  20354921 tctctcttacctacttctcttttcacaatttctcttcgtaaccaaacacaccct 20354868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 39676281 - 39676228
Alignment:
Q  10 tctctcttaccaacttctctctttacaatttctcttctataccaaacacaccct 63  Q
    ||||||||||| | |||||||||| ||| |||||||||  ||||||||||||||    
T  39676281 tctctcttacctatttctctctttccaacttctcttctgaaccaaacacaccct 39676228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 10364993 - 10364947
Alignment:
Q  11 ctctcttaccaacttctctctttacaatttctcttctataccaaaca 57  Q
    |||||||  ||||||||||||||||||||||||||||| ||||||||    
T  10364993 ctctcttttcaacttctctctttacaatttctcttctaaaccaaaca 10364947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 5492382 - 5492432
Alignment:
Q  10 tctctcttaccaacttctctctttacaatttctcttctataccaaacacac 60  Q
    ||||||||||| ||||||||||| |||||||||||| |  |||||||||||    
T  5492382 tctctcttacctacttctctcttcacaatttctcttatcaaccaaacacac 5492432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 17888367 - 17888420
Alignment:
Q  10 tctctcttaccaacttctctctttacaatttctcttctataccaaacacaccct 63  Q
    ||||||| ||| | ||||||||| ||||||||||||||| ||||||||||||||    
T  17888367 tctctctcacctatttctctcttcacaatttctcttctaaaccaaacacaccct 17888420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 27878634 - 27878578
Alignment:
Q  24 ttctctctttacaatttctcttctataccaaacacacccttagtgtgtaaaagaaga 80  Q
    ||||||||| ||||||||||||| | |||||||||||||| ||||||| ||| ||||    
T  27878634 ttctctcttcacaatttctcttccaaaccaaacacaccctaagtgtgttaaaaaaga 27878578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 8223868 - 8223806
Alignment:
Q  7 aattctctcttaccaacttctctctttacaatttctcttctataccaaacacacccttagtgt 69  Q
    |||||||||||| | | ||||||||| |||| |||||||||  |||||||||||| |||||||    
T  8223868 aattctctcttatctatttctctcttcacaacttctcttcttaaccaaacacaccattagtgt 8223806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 9686631 - 9686577
Alignment:
Q  8 attctctcttaccaacttctctctttacaatttctcttctataccaaacacaccc 62  Q
    ||||||||||  |||||||||||||| ||| |||||| ||| |||||||||||||    
T  9686631 attctctcttcacaacttctctctttgcaacttctctcctaaaccaaacacaccc 9686577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 1157066 - 1157119
Alignment:
Q  9 ttctctcttaccaacttctctctttacaatttctcttctataccaaacacaccc 62  Q
    |||||||| ||| | ||||||||| |||| |||||||||| |||||||||||||    
T  1157066 ttctctctcacctatttctctcttcacaacttctcttctaaaccaaacacaccc 1157119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 38503564 - 38503511
Alignment:
Q  10 tctctcttaccaacttctctctttacaatttctcttctataccaaacacaccct 63  Q
    ||||||||||| |||||||||||  ||| |||||||| | ||||||||||||||    
T  38503564 tctctcttacctacttctctcttctcaacttctcttccaaaccaaacacaccct 38503511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 39039856 - 39039800
Alignment:
Q  10 tctctcttaccaacttctctctttacaatttctcttctataccaaacacacccttag 66  Q
    |||||||  |||| ||||||||| |||  |||||||||| |||||||||||||||||    
T  39039856 tctctctctccaatttctctcttcacatcttctcttctaaaccaaacacacccttag 39039800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 9780216 - 9780161
Alignment:
Q  8 attctctcttaccaacttctctctttacaatttctcttctataccaaacacaccct 63  Q
    ||||||||||||| | |||| |||| |||| ||||||| || ||||||||||||||    
T  9780216 attctctcttacctatttctatcttcacaacttctcttataaaccaaacacaccct 9780161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 11447314 - 11447369
Alignment:
Q  10 tctctcttaccaacttctctctttacaatttctcttctataccaaacacaccctta 65  Q
    ||||||| ||| | ||||||||| |||| |||||||| | ||||||||||||||||    
T  11447314 tctctctcacctatttctctcttcacaacttctcttccaaaccaaacacaccctta 11447369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 19962527 - 19962472
Alignment:
Q  11 ctctcttaccaacttctctctttacaatttctcttctataccaaacacacccttag 66  Q
    |||||||||  | ||||||||| | || |||||||||| |||||||||||||||||    
T  19962527 ctctcttacatatttctctcttcagaacttctcttctaaaccaaacacacccttag 19962472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 32; Significance: 0.000000003; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 105565 - 105522
Alignment:
Q  25 tctctctttacaatttctcttctataccaaacacacccttagtg 68  Q
    |||||||| ||||||||||||||| || ||||||||||||||||    
T  105565 tctctcttcacaatttctcttctaaacgaaacacacccttagtg 105522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 1537 - 1486
Alignment:
Q  10 tctctcttaccaacttctctctttacaatttctcttctataccaaacacacc 61  Q
    ||||||||||| | || |||||| |||| |||||||||| ||||||||||||    
T  1537 tctctcttacctatttatctcttcacaacttctcttctaaaccaaacacacc 1486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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