View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2071-Insertion-3 (Length: 791)
Name: NF2071-Insertion-3
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071-Insertion-3 |
 | |
|
| [»] scaffold0259 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 582; Significance: 0; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 8 - 625
Target Start/End: Complemental strand, 32582333 - 32581716
Alignment:
| Q |
8 |
gatttgataaaatgggcgaggaagtttcacttcaatggacaggtgatgaggaaaagagatttaaggatataatgagtctaaatatcccctcccaaaacaa |
107 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32582333 |
gatttgataaaatgggtgaggaagtttcacttcaatggacaggtgatgaggaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaa |
32582234 |
T |
|
| Q |
108 |
gtctttttggaacaatccgtccagttactttcaaaagaggacaagaaaagacatggtgagatattacttcaatgtatatcttattcaactaagaagctat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32582233 |
gtctttttggaacaatccgtccagttactttcaaaagaggacaagaaaagacatggtgagatattacttcaatgtatatcttattcaactaagaagctat |
32582134 |
T |
|
| Q |
208 |
cagaatcgagtgacttcggtgactgttgacagtgatgatgacgaaatcgaatttgaatcttttggtgatggtttcgggaggaaagctatcaagcgtccat |
307 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32582133 |
cagaatcgagtgacttcggagactgtttacagtgatgatgacgaaatcgaatttgaatcttttggtgatggtttcgggaggaaagctatcaagcgtccat |
32582034 |
T |
|
| Q |
308 |
caattgaattcaaggagtgttccgagaataagtaatgctttgattttaagttgacaaaacagtgtgataagccatttgaggaagaacttgtagaggctgc |
407 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
32582033 |
caattgaattcaaggagtgttcagagaataagtaatgctttgattttaagttgacaaaacagtgtgataagccatttgaggaagaacttgtagaggctcc |
32581934 |
T |
|
| Q |
408 |
tgttgtttactgcatcctccttggaggggctgctaaactccaccccccaccccgacaacaacatttatgctgtaaaactttaatttcacttttggaccgc |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32581933 |
tgttgtttactgcatcctccttggaggggctgctaaactccaccccccaccccgacaacaacatttatgctgtaaaactttaatttcacttttggaccgc |
32581834 |
T |
|
| Q |
508 |
atttgtgctgtaaaactagccgtttagtcagagcgctttcaaatttatggttatagttagatatttgtatgttaaatttaagaagtttatttgtggcagg |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32581833 |
atttgtgctgtaaaactagccgtttagtcagagcgctttcaagtttatggttttagttagatatttgtatgttaaatttaagaagtttatttgtgccagg |
32581734 |
T |
|
| Q |
608 |
tctttgactttggaatag |
625 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
32581733 |
tctttgactttggaatag |
32581716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 8 - 407
Target Start/End: Complemental strand, 32631579 - 32631180
Alignment:
| Q |
8 |
gatttgataaaatgggcgaggaagtttcacttcaatggacaggtgatgaggaaaagagatttaaggatataatgagtctaaatatcccctcccaaaacaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32631579 |
gatttgataaaatgggcgaggaagtttcacttcaatggacaggtgatgaagaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaa |
32631480 |
T |
|
| Q |
108 |
gtctttttggaacaatccgtccagttactttcaaaagaggacaagaaaagacatggtgagatattacttcaatgtatatcttattcaactaagaagctat |
207 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
32631479 |
gtctttttggaacaatccatccagttactttcaaaagaggacaagaaaagacatggtgagttattacttcaatgtatatcttattcaactaagaagttat |
32631380 |
T |
|
| Q |
208 |
cagaatcgagtgacttcggtgactgttgacagtgatgatgacgaaatcgaatttgaatcttttggtgatggtttcgggaggaaagctatcaagcgtccat |
307 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32631379 |
cagaatcgagtgacttcggagactgttgacagtgatgatgacgaaatcgaatttgaatcttttggtgatggtttcgggaggaaagctatccagcgtccat |
32631280 |
T |
|
| Q |
308 |
caattgaattcaaggagtgttccgagaataagtaatgctttgattttaagttgacaaaacagtgtgataagccatttgaggaagaacttgtagaggctgc |
407 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
32631279 |
caattgaattcaaggagtgttcagagaacaagtaatgctttgattttaagtagacaaaacagtgtgataagccatttgaggaagaaattgtagaagctgc |
32631180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 8 - 407
Target Start/End: Complemental strand, 32657471 - 32657069
Alignment:
| Q |
8 |
gatttgataaaatgggcgaggaagtttcacttcaatggacaggtgatgaggaaaagagatttaaggatataatgagtctaaatatcccctcccaaaacaa |
107 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32657471 |
gatttgataaaatgggtgaggaagtttcacttcaatggacaggtgatgaagaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaa |
32657372 |
T |
|
| Q |
108 |
gtctttttggaacaatccgtccagttactttcaaaagaggacaagaaaagacatggtgagatattacttcaatgtatatcttattcaactaagaagctat |
207 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
32657371 |
gtctttttggaacaatccatccagttactttcaaaagaggacaagaaaagacatggtgagttattacttcaatgtatatcttattcaactaagaagttat |
32657272 |
T |
|
| Q |
208 |
cagaatcgagtgacttcggtgactgttgacagtgatgatgacgaaatcgaatttgaatcttttggtgatggtttcgggaggaaagctatcaagcgtccat |
307 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32657271 |
cagaatcgagtgacttcggagactgttgacagtgatgatgacgaaatcgaatttgaatcttttggtgatggtttcgggaggaaagctatcaagcgtccat |
32657172 |
T |
|
| Q |
308 |
caattgaattcaaggagtgttccgagaataagtaatgctttgattttaagttgacaaaacagtgtgataa---gccatttgaggaagaacttgtagaggc |
404 |
Q |
| |
|
||||||||||||||||||| || ||||| |||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||| ||| ||| || |
|
|
| T |
32657171 |
caattgaattcaaggagtgctcagagaacaagtaatgctttgattttaagtagacaaaacagtctgataagccgccatttgaggaagaaattggagaagc |
32657072 |
T |
|
| Q |
405 |
tgc |
407 |
Q |
| |
|
||| |
|
|
| T |
32657071 |
tgc |
32657069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 33 - 408
Target Start/End: Complemental strand, 32600441 - 32600066
Alignment:
| Q |
33 |
ttcacttcaatggacaggtgatgaggaaaagagatttaaggatataatgagtctaaatatcccctcccaaaacaagtctttttggaacaatccgtccagt |
132 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
32600441 |
ttcacttcaatggacaggtgatgaagaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaattctttttggaacaatccatccagt |
32600342 |
T |
|
| Q |
133 |
tactttcaaaagaggacaagaaaagacatggtgagatattacttcaatgtatatcttattcaactaagaagctatcagaatcgagtgacttcggtgactg |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
32600341 |
tactttcaaaagaggacaagaaaagacatggtgagttattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcggagactg |
32600242 |
T |
|
| Q |
233 |
ttgacagtgatgatgacgaaatcgaatttgaatcttttggtgatggtttcgggaggaaagctatcaagcgtccatcaattgaattcaaggagtgttccga |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
|
|
| T |
32600241 |
ttgacagtgatgatgacgaaatcgaatttggatcttttggtgatggtttcgggaggaaagctatcaagcgtccaacaattgaattcaaggagtgttcaga |
32600142 |
T |
|
| Q |
333 |
gaataagtaatgctttgattttaagttgacaaaacagtgtgataagccatttgaggaagaacttgtagaggctgct |
408 |
Q |
| |
|
||| ||||||| |||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
32600141 |
gaacaagtaatactttgattttaagtagacaagacagtgtgataagccatttgagaaagaacttgtagaagctgct |
32600066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 655 - 791
Target Start/End: Complemental strand, 32581686 - 32581551
Alignment:
| Q |
655 |
cattaattattcttctactagattagcttgttatcatgggggctcaactttgcaaattgtggtggaggtttcctttccctatcttttgggatttccttca |
754 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32581686 |
cattaattattcttctactagattagcttgttatcatgggg-ctcaactttgcaaattgtggtggaggtttcctttccctatcttttgggatttccttca |
32581588 |
T |
|
| Q |
755 |
ccactcttcactgccactgcctatcaccttccaccac |
791 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32581587 |
ccactcttcactgccactgcctatcaccttccaccac |
32581551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 407 - 625
Target Start/End: Complemental strand, 32631156 - 32630945
Alignment:
| Q |
407 |
ctgttgtttactgcatcctccttggaggggctgctaaactccaccccccaccccg-acaacaacatttatgctgtaaaactttaatttcacttttggacc |
505 |
Q |
| |
|
|||||||||| ||| ||||||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32631156 |
ctgttgtttattgcgtcctccttggaggcgctgc-------caccccccgccccggacaacaacatttatgctgtaaaactttgttttcacttttggata |
32631064 |
T |
|
| Q |
506 |
gcatttgtgctgtaaaactagccgtttagtcagagcgctttcaaatttatggttatagttagatatttgtatgttaaatttaagaagtttatttgtggca |
605 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| |||| |||| |||||||| ||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
32631063 |
gcatt-gtgctgtaaaactagccgtttagtcagagcgctttcaagtttacggttttagttagacatttgtaagttaaatttaaaaagtttatttgtggcg |
32630965 |
T |
|
| Q |
606 |
ggtctttgactttggaatag |
625 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
32630964 |
ggtctttgactttggaatag |
32630945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 471 - 625
Target Start/End: Complemental strand, 32657044 - 32656890
Alignment:
| Q |
471 |
tttatgctgtaaaactttaatttcacttttggaccgcatttgtgctgtaaaactagccgtttagtcagagcgctttcaaatttatggttatagttagata |
570 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||| |||||||||||||| |||||||||||||| ||||||||| || | ||||||| || ||||| | |
|
|
| T |
32657044 |
tttatgctgtaaaactttgttttcacttttcgactacatttgtgctgtaaccctagccgtttagtcggagcgctttgaagtgtatggttttatttagaca |
32656945 |
T |
|
| Q |
571 |
tttgtatgttaaatttaagaagtttatttgtggcaggtctttgactttggaatag |
625 |
Q |
| |
|
|||||| |||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
32656944 |
tttgtaagttaaaattaaatagtttatttgtggcaggtctttgactttggaatag |
32656890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 676 - 789
Target Start/End: Complemental strand, 32656814 - 32656693
Alignment:
| Q |
676 |
attagcttgttatcatgggggctcaactttgcaaattgtggtggaggtttcctttccctatcttttgggatt---------tccttcaccactcttcact |
766 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||| | ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32656814 |
attagcttgttatcatgggg-ctcaactttgcaaactgtggtggagatatcctttccctatcttttgggatttcctccatttccttcaccactcttcacc |
32656716 |
T |
|
| Q |
767 |
gccactgcctatcaccttccacc |
789 |
Q |
| |
|
||||||||| |||||||||||| |
|
|
| T |
32656715 |
cccactgcctctcaccttccacc |
32656693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 676 - 751
Target Start/End: Complemental strand, 32630863 - 32630789
Alignment:
| Q |
676 |
attagcttgttatcatgggggctcaactttgcaaattgtggtggaggtttcctttccctatcttttgggatttcct |
751 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
32630863 |
attagcttgttatcatgggg-ctcaactttgcaaactgctgtggaggtttcctttccctatcttttgggatttcct |
32630789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 481 - 549
Target Start/End: Complemental strand, 32599965 - 32599898
Alignment:
| Q |
481 |
aaaactttaatttcacttttggaccgcatttgtgctgtaaaactagccgtttagtcagagcgctttcaa |
549 |
Q |
| |
|
|||||||| |||||||| |||| |||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
32599965 |
aaaactttgttttcacttcaggacagcatttgtgctgtaaa-ctagccgtttagtcggagcgctttcaa |
32599898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 8 - 367
Target Start/End: Complemental strand, 41147339 - 41146980
Alignment:
| Q |
8 |
gatttgataaaatgggcgaggaagtttcacttcaatggacaggtgatgaggaaaagagatttaaggatataatgagtctaaatatcccctcccaaaacaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||| ||| || |||| |||||||| |||||||| |
|
|
| T |
41147339 |
gatttgataaaatgggcgaggaagtttcacttcgatggacagctgatgaagaaaagagatttaaggatgcaataggtttaaaaatcccctctcaaaacaa |
41147240 |
T |
|
| Q |
108 |
gtctttttggaacaatccgtccagttactttcaaaagaggacaagaaaagacatggtgagatattacttcaatgtatatcttattcaactaagaagctat |
207 |
Q |
| |
|
|||||||||||||||||| ||||| | ||||| || || ||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
41147239 |
gtctttttggaacaatccatccagatgctttcgaaggaagacaagaaaagacttggtgagctattacttcaatgtatattttattcaactaagaagctat |
41147140 |
T |
|
| Q |
208 |
cagaatcgagtgacttcggtgactgttgacagtgatgatgacgaaatcgaatttgaatcttttggtgatggtttcgggaggaaagctatcaagcgtccat |
307 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||| | ||||||| |||||||| |||||||||||| |||||||||||||||| ||||| |
|
|
| T |
41147139 |
cagaatcgagtgactccgaatgctgttgacagtgatgatgacgaagtggaatttggatcttttgatgatggtttcggaaggaaagctatcaagcatccat |
41147040 |
T |
|
| Q |
308 |
caattgaattcaaggagtgttccgagaataagtaatgctttgattttaagttgacaaaac |
367 |
Q |
| |
|
| || ||||||| ||||||| | ||||| ||| |||||||||||||| ||| |||||||| |
|
|
| T |
41147039 |
ctatggaattcatggagtgtacagagaacaagcaatgctttgattttgagtagacaaaac |
41146980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 8 - 384
Target Start/End: Complemental strand, 41172220 - 41171844
Alignment:
| Q |
8 |
gatttgataaaatgggcgaggaagtttcacttcaatggacaggtgatgaggaaaagagatttaaggatataatgagtctaaatatcccctcccaaaacaa |
107 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||||| |||||| |||||||||||||||||| |||||| |||| |||||||||||||||| |
|
|
| T |
41172220 |
gatttgataaaatgggtgaggaagtttcacttcgatggacagctgatgaagaaaagagatttaaggatgcaatgaggttaaaattcccctcccaaaacaa |
41172121 |
T |
|
| Q |
108 |
gtctttttggaacaatccgtccagttactttcaaaagaggacaagaaaagacatggtgagatattacttcaatgtatatcttattcaactaagaagctat |
207 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||| ||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
41172120 |
gtctttttggaacaatccttccagatactttcgaaacaagacaagaaaagacatggtgagctattacttcaatgtatatcttattcaactaagaagttat |
41172021 |
T |
|
| Q |
208 |
cagaatcgagtgacttcggtgactgttgacagtgatgatgacgaaatcgaatttgaatcttttggtgatggtttcgggaggaaagctatcaagcgtccat |
307 |
Q |
| |
|
|||||||||||||| || |||||||||||| || ||||||||| | ||||||| |||||||||||||||||| |||||| ||||||| |||| ||||| |
|
|
| T |
41172020 |
cagaatcgagtgaccccgaagactgttgacagcgacgatgacgaagttgaatttggatcttttggtgatggttttgggagggaagctatgaagcatccat |
41171921 |
T |
|
| Q |
308 |
caattgaattcaaggagtgttccgagaataagtaatgctttgattttaagttgacaaaacagtgtgataagccattt |
384 |
Q |
| |
|
|| || | | ||||||||| ||||| ||| |||||||||| ||| ||| |||||| |||| |||||||||||| |
|
|
| T |
41171920 |
atatggattacttggagtgttcagagaacaagcaatgctttgactttgagtagacaaagaagtgcgataagccattt |
41171844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 401
Target Start/End: Complemental strand, 41164103 - 41163709
Alignment:
| Q |
8 |
gatttgataaaatgggcgaggaagtttcacttcaatggacaggtgatgaggaaaagagatttaaggatataatgagtctaaatatcccctcccaaaacaa |
107 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||||| |||||| |||||||||||||||||| ||||| |||| ||||| ||||||||||| |
|
|
| T |
41164103 |
gatttgataaaatgggcgaagaagtttcacttcgatggacagctgatgaagaaaagagatttaaggatgcgatgaggttaaaaatcccttcccaaaacaa |
41164004 |
T |
|
| Q |
108 |
gtctttttggaacaatccgtccagttactttcaaaagaggacaagaaaagacatggtgagatattacttcaatgtatatcttattcaactaagaagctat |
207 |
Q |
| |
|
|||||||||||||||||| |||| ||||||| || || ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
41164003 |
gtctttttggaacaatccatccatatactttcgaaggaagacaagaaaagacatggtgagctattgcttcaatgtatatcttattcaactaagaagctat |
41163904 |
T |
|
| Q |
208 |
cagaatcgagtgacttcggtgactgttgacagtgatgatgacgaaatcgaatttgaatcttttggtgatggtttcgggaggaaagctatcaagcgtccat |
307 |
Q |
| |
|
| ||||||||||| | || |||||||||| | | |||| ||| | ||||||| ||| |||||| ||||||| |||| |||||||||||||| ||||| |
|
|
| T |
41163903 |
cggaatcgagtgaatccgaagactgttgactgcaacaatgaggaagttgaatttggatcgtttggttatggttttgggatgaaagctatcaagcatccat |
41163804 |
T |
|
| Q |
308 |
caattgaattcaaggagtgttccgagaataagtaatgctttgattttaagttgacaaaacagtgtgataagcca-tttgaggaagaacttgtaga |
401 |
Q |
| |
|
| || ||||||| ||||| ||| ||||| | |||||||||||||| ||| ||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
41163803 |
ctatggaattcatggagtattcagagaacacacaatgctttgattttgagtagacaagacagtgtgataagccattttgaggaagaacttgtaga |
41163709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 529 - 622
Target Start/End: Complemental strand, 41163608 - 41163515
Alignment:
| Q |
529 |
gtttagtcagagcgctttcaaatttatggttatagttagatatttgtatgttaaatttaagaagtttatttgtggcaggtctttgactttggaa |
622 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| || ||||| ||||||| |||||||||| || ||||||||||||||||||||||||| |||| |
|
|
| T |
41163608 |
gtttagtcgaagcgctttcaagtttatggttttatttagacatttgtaagttaaatttacaaattttatttgtggcaggtctttgacttaggaa |
41163515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 496 - 625
Target Start/End: Complemental strand, 41171455 - 41171327
Alignment:
| Q |
496 |
cttttggaccgcatttgtgctgtaaaactagccgtttagtcagagcgctttcaaatttatggttatagttagatatttgtatgttaaatttaagaagttt |
595 |
Q |
| |
|
||||||||| ||||||||||||||||||| | ||| ||| || ||||||| ||||||||| ||||| | ||||||| ||||||||| || ||| |
|
|
| T |
41171455 |
cttttggacatcatttgtgctgtaaaactatc-gttccgtcggaatactttcaagtttatggttttagttggtaatttgtaaattaaatttacaaatttt |
41171357 |
T |
|
| Q |
596 |
atttgtggcaggtctttgactttggaatag |
625 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |
|
|
| T |
41171356 |
atttgtggcaggtctttgactttgaaatag |
41171327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0259 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 8 - 283
Target Start/End: Complemental strand, 21669 - 21394
Alignment:
| Q |
8 |
gatttgataaaatgggcgaggaagtttcacttcaatggacaggtgatgaggaaaagagatttaaggatataatgagtctaaatatcccctcccaaaacaa |
107 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||| | |||||||||||||||| ||||||||||||||| |||||||||||||| || |
|
|
| T |
21669 |
gatttgataaaatgggtgaggaagtttcacatcaatggacaggtgattaagaaaagagatttaaggttataatgagtctaaaaatcccctcccaaaataa |
21570 |
T |
|
| Q |
108 |
gtctttttggaacaatccgtccagttactttcaaaagaggacaagaaaagacatggtgagatattacttcaatgtatatcttattcaactaagaagctat |
207 |
Q |
| |
|
|||||||| |||||||| || |||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21569 |
ttctttttgcaacaatccatcaagttactttcaaaagagggcaagaaaagacatgctgagttattacttcaatgtatatcttattcaactaagaagctat |
21470 |
T |
|
| Q |
208 |
cagaatcgagtgacttcggtgactgttgacagtgatgatgacgaaatcgaatttgaatcttttggtgatggtttcg |
283 |
Q |
| |
|
||||||| ||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21469 |
cagaatcaagtgacttcaaggaccgttgatagtgatgatgacgaaatcgaatttgaatcttttggtgatggtttcg |
21394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 4e-65; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 8 - 301
Target Start/End: Complemental strand, 26404952 - 26404661
Alignment:
| Q |
8 |
gatttgataaaatgggcgaggaagtttcacttcaatggacaggtgatgaggaaaagagatttaaggatataatgagtctaaatatcccctcccaaaacaa |
107 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||| ||||| |||| || ||||| |||| ||| |
|
|
| T |
26404952 |
gatttgataaaatgggcgaagaagtttcacttcaatggacatctgatgaagaaaagagatttaaggatgcaatgaagttaaaaattccctctcaaagcaa |
26404853 |
T |
|
| Q |
108 |
gtctttttggaacaatccgtccagttactttcaaaagaggacaagaaaagacatggtgagatattacttcaatgtatatcttattcaactaagaagctat |
207 |
Q |
| |
|
||| | |||||| ||||| || || | |||||||| || ||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26404852 |
gtcatattggaaaaatccatctagatgctttcaaaggaatgcaagaaaagac--ggtgagctattacttcaatgtatatcttattcaactaagaatctat |
26404755 |
T |
|
| Q |
208 |
cagaatcgagtgacttcggtgactgttgacagtgatgatgacgaaatcgaatttgaatcttttggtgatggtttcgggaggaaagctatcaagc |
301 |
Q |
| |
|
|| |||||||||||| || |||||||||| ||| ||||||||| | |||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
26404754 |
caaaatcgagtgactccgaacactgttgacaatgacgatgacgaagtggaatttgaatcttttggtgatggttttgaagggaaagctatcaagc |
26404661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 259 - 408
Target Start/End: Complemental strand, 26398313 - 26398163
Alignment:
| Q |
259 |
tttgaatcttttggtgatggtttcgggaggaaagctatcaagcgtccatcaattgaattcaaggagtgttccgagaataagtaatgctttgattttaagt |
358 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||| |||||| | || |||| ||||||||| ||||| | | |||||||||||||| ||| |
|
|
| T |
26398313 |
tttggatcatttggtgatggtttcgggaggaaagctatcaagcatccatctacggatttcatggagtgttcagagaacacgcaatgctttgattttgagt |
26398214 |
T |
|
| Q |
359 |
tgacaaaacagtgtgataagcca-tttgaggaagaacttgtagaggctgct |
408 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||| |||| ||||| |||||| |
|
|
| T |
26398213 |
agacaaaacagtgtggtaagccattttgaggaaaaactcgtagatgctgct |
26398163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 4e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 259 - 408
Target Start/End: Original strand, 21016101 - 21016251
Alignment:
| Q |
259 |
tttgaatcttttggtgatggtttcgggaggaaagctatcaagcgtccatcaattgaattcaaggagtgttccgagaataagtaatgctttgattttaagt |
358 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||| |||||| || || |||| ||||||||| ||||| | | |||||||||||||| ||| |
|
|
| T |
21016101 |
tttggatcatttggtgatggtttcgggaggaaagctatcaagcatccatctatggatttcatggagtgttcagagaacacgcaatgctttgattttgagt |
21016200 |
T |
|
| Q |
359 |
tgacaaaacagtgtgataagcca-tttgaggaagaacttgtagaggctgct |
408 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||| |||| ||||| |||||| |
|
|
| T |
21016201 |
agacaaaacagtgtggtaagccattttgaggaaaaactcgtagaagctgct |
21016251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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