View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071-Insertion-4 (Length: 729)
Name: NF2071-Insertion-4
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 8 - 497
Target Start/End: Complemental strand, 7383526 - 7383041
Alignment:
| Q |
8 |
ttttctctcaattttgtccttattaattgaaaaaacattaaaaattaattttcatataatttcatatttaacttttaatcaagcattacaaattcaactc |
107 |
Q |
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| T |
7383526 |
ttttctctcaattttgtccttatta--tgaaaaaacattaaaaattaattttcatat----------ttaacttttaatcaagcattacaaattcaactc |
7383439 |
T |
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| Q |
108 |
cctaattatctagtatcaattaaattaatttatttgttatcctatataatataagatcattccatatcagttagctaattagtccgccactctttaccaa |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7383438 |
cctaattatctagtatcaattaaattaatttatttgttatcctatataatataagatcattccatattagttagctaattagtccgccactctttaccaa |
7383339 |
T |
|
| Q |
208 |
gcaaagtctaaactagagaatcccttatccaacagttgatgctatcatt----ggtcccgtccnnnnnnnnn---aaattaaaagaaacccatgttacag |
300 |
Q |
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| T |
7383338 |
gcaaagtctaaactagagaatcccttatccaacagttgatgctatcattcattggtcccgtccttttttttttttaaattaaaagaaacccatgttacag |
7383239 |
T |
|
| Q |
301 |
atttctcaatacctttttattactggaggaaatcatgttggctcatttctaaaatggtaaaatgtggaaaactttcacctaataataagtttatgtattg |
400 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7383238 |
atttctcaatacctttttattattggaggaaatcatgttggctcatttctaaaatggtaaaatgtggaaaactttcacctaataataagtttatgtattg |
7383139 |
T |
|
| Q |
401 |
tatgtatgcatcataggattagttttgtaagtttttcatgacatgtgaattgaa-ttttgaatgcaaatgagatagtgataatagctcttagtatttt |
497 |
Q |
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| T |
7383138 |
tatgtatgcatcataggattagttttgtaagtttttcatgacacgtgaattgaatttttgaatgcaaatgagatagtgataatagctcttagtatttt |
7383041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 523 - 559
Target Start/End: Complemental strand, 34145806 - 34145770
Alignment:
| Q |
523 |
agcttgagtattctatagtgtcacctaaatagcttgg |
559 |
Q |
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| T |
34145806 |
agcttgagtattctatagtgtcacctaaatagcttgg |
34145770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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