View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071-Insertion-6 (Length: 560)
Name: NF2071-Insertion-6
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071-Insertion-6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 7 - 434
Target Start/End: Complemental strand, 354423 - 353996
Alignment:
| Q |
7 |
atcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacctc |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
354423 |
atcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgctatgtcactttgcacctc |
354324 |
T |
|
| Q |
107 |
cctttccttggccagacattacaaacacacacaatgactcaacactatttggacatgtttctatggagacaactgaaactcatcatttgttatgcgttga |
206 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
354323 |
cctttccttgaccagacattacaaacacacacaatgactcaacactatttggacatgtttctatggagacaactgaaactcatcatttgttatgcattga |
354224 |
T |
|
| Q |
207 |
agaatccataacactgctccagcaatgatcacaattatggagtaatagagggaaagaataaagctaattctctactttacagttacataatgtatgaatt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
354223 |
agaatccataacactgctccagcaatgatcacaattatggagtaatagagggaaagaataaagctaattctctactttacagttacataatgtatgaatt |
354124 |
T |
|
| Q |
307 |
tcacttgtctccttcccttcaaccttcaacagatcagacataaccaactgcgggtccgagtttctgagtcttttgatcaagcttctttgttatagtggca |
406 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
354123 |
tcacttgtctccttcccttcaaccttcaatagatcagacataaccaactgcgggtccgagtttctgagtcttctgatcaagcttctttgttatagtggca |
354024 |
T |
|
| Q |
407 |
aacttaaccttcaaaaacaaacatcaca |
434 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
354023 |
aacttaaccttcaaaaacaaacatcaca |
353996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 7 - 127
Target Start/End: Complemental strand, 10580806 - 10580686
Alignment:
| Q |
7 |
atcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacctc |
106 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
10580806 |
atcctcttcacaccaactcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcaatatcactttgcacctc |
10580707 |
T |
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| Q |
107 |
cctttccttggccagacatta |
127 |
Q |
| |
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|||||| ||| |||||||||| |
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| T |
10580706 |
cctttcattgaccagacatta |
10580686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 498 - 560
Target Start/End: Complemental strand, 353931 - 353869
Alignment:
| Q |
498 |
aataaaaatagcaaaagattcactctttcttcgttcttacatgtttctttctctcttcccact |
560 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
353931 |
aataaaaatagcaaaagattcactctttcttcgttcttacatgtttctttctctcttcccact |
353869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 10575400 - 10575299
Alignment:
| Q |
13 |
ttcacaccacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacctccctttc |
112 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||||| |||||||| ||||| | | |||||||||||||||| ||||||||| ||||||| |
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| T |
10575400 |
ttcacacctcctcttctcgccaatcgacgaatcgctggctttgtgattccttggatgttgtcacggagaaccttgcgatgtctctttgcacccccctttc |
10575301 |
T |
|
| Q |
113 |
ct |
114 |
Q |
| |
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|| |
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|
| T |
10575300 |
ct |
10575299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 10580662 - 10580612
Alignment:
| Q |
190 |
catttgttatgcgttgaagaatccataacactgctccagcaatgatcacaa |
240 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||| ||||||| |||| |
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| T |
10580662 |
catttgttatgcgttgaagaatccatgacactgctccaacaatgataacaa |
10580612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 10 - 114
Target Start/End: Original strand, 14261198 - 14261302
Alignment:
| Q |
10 |
ctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacctccct |
109 |
Q |
| |
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||||||||||| ||||||||||| |||| ||||||||||||||||| |||||||| ||||| | | ||| || |||||||||| |||||||||||||| |
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| T |
14261198 |
ctcttcacacctcctcttctcgctaatcgccgaatcgctggctttgtgattccttggatgttgtcacgaagcactttgcgatgtctctttgcacctccct |
14261297 |
T |
|
| Q |
110 |
ttcct |
114 |
Q |
| |
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||||| |
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| T |
14261298 |
ttcct |
14261302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 10 - 114
Target Start/End: Original strand, 21584763 - 21584867
Alignment:
| Q |
10 |
ctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacctccct |
109 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||||| || ||||| ||||||||| | | |||||| || | |||| |||||||||||||| |
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| T |
21584763 |
ctcttaacaccacctcttctcgccaatcgacgaatcgctggcttggtgattccctgaatgttatcacgaagaactttcctgtgtctctttgcacctccct |
21584862 |
T |
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| Q |
110 |
ttcct |
114 |
Q |
| |
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||||| |
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| T |
21584863 |
ttcct |
21584867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 10 - 113
Target Start/End: Complemental strand, 25085054 - 25084951
Alignment:
| Q |
10 |
ctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacctccct |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||| || || || || |||||| | | ||||||||| | ||| | |||||||||||||| |
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| T |
25085054 |
ctcttcacaccacctcttctcgccaatctacgaatggcaggcttggtgataccctggatgttatcacgaagaacctttctatgcctctttgcacctccct |
25084955 |
T |
|
| Q |
110 |
ttcc |
113 |
Q |
| |
|
|||| |
|
|
| T |
25084954 |
ttcc |
25084951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 24920052 - 24920155
Alignment:
| Q |
10 |
ctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacctccct |
109 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||| || ||||| || || || || |||||| | | |||||| || | ||| | |||||||||||||| |
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| T |
24920052 |
ctcttcacaccacctcttcttgccaatcgacgaattgcaggcttggtgataccctggatgttatcacgaagaactttcctatgcctctttgcacctccct |
24920151 |
T |
|
| Q |
110 |
ttcc |
113 |
Q |
| |
|
|||| |
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|
| T |
24920152 |
ttcc |
24920155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 24923626 - 24923729
Alignment:
| Q |
10 |
ctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacctccct |
109 |
Q |
| |
|
||||| |||||||||||||| ||||||| |||||| || ||||| || || || || |||||| | | ||||||||| | ||| | |||||||||||||| |
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|
| T |
24923626 |
ctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaacctttctatgcctctttgcacctccct |
24923725 |
T |
|
| Q |
110 |
ttcc |
113 |
Q |
| |
|
|||| |
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|
| T |
24923726 |
ttcc |
24923729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 31825720 - 31825766
Alignment:
| Q |
7 |
atcctcttcacaccacctcttctcgccaatctacgaatcgctggctt |
53 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| || ||||| |
|
|
| T |
31825720 |
atcctcttcacaccacctcttctcgccaatcgacgaatggcaggctt |
31825766 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 24982062 - 24981958
Alignment:
| Q |
10 |
ctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacctccct |
109 |
Q |
| |
|
||||| |||||||||||||| ||||||| |||||| || ||||| || || || || |||||| | | |||||| || | ||| | |||||||||||||| |
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|
| T |
24982062 |
ctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaactttcctatgcctctttgcacctccct |
24981963 |
T |
|
| Q |
110 |
ttcct |
114 |
Q |
| |
|
||||| |
|
|
| T |
24981962 |
ttcct |
24981958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 24497425 - 24497528
Alignment:
| Q |
10 |
ctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacctccct |
109 |
Q |
| |
|
||||| |||||||||||||| ||||||| |||||| || ||||| || || || || ||||| | | ||||||||| | ||| | |||||||||||||| |
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|
| T |
24497425 |
ctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttgtcacgaagaaccttcctatgcctctttgcacctccct |
24497524 |
T |
|
| Q |
110 |
ttcc |
113 |
Q |
| |
|
|||| |
|
|
| T |
24497525 |
ttcc |
24497528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 528 - 560
Target Start/End: Complemental strand, 24579096 - 24579064
Alignment:
| Q |
528 |
tcgttcttacatgtttctttctctcttcccact |
560 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
24579096 |
tcgttcttacatgtttctttctctcttcccact |
24579064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 22898540 - 22898466
Alignment:
| Q |
39 |
acgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacctccctttcc |
113 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| | | ||| ||||| ||||||| |||||| || |||||||| |
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|
| T |
22898540 |
acgaatcgctggctttgttattccctggatgttgtcacgaagcaccttacgatgtcgctttgctccaccctttcc |
22898466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 22950208 - 22950134
Alignment:
| Q |
39 |
acgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacctccctttcc |
113 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| | | ||| ||||| ||||||| |||||| || |||||||| |
|
|
| T |
22950208 |
acgaatcgctggctttgttattccctggatgttgtcacgaagcaccttacgatgtcgctttgctccaccctttcc |
22950134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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