View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071-Insertion-7 (Length: 519)
Name: NF2071-Insertion-7
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071-Insertion-7 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 234 - 519
Target Start/End: Complemental strand, 20757277 - 20756992
Alignment:
| Q |
234 |
catttcttgcagagacaatcaatacctttgacaaagcaagtggactattattcacaagtgcatgaaaaattgacacagcaaacagaagcatatatacttc |
333 |
Q |
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| T |
20757277 |
catttcttgcagagacaatcaatacctttgacaaagcaagtggactattattcacaaatgcatgaaaaattgacacaacaaacagaagcatctatacttc |
20757178 |
T |
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| Q |
334 |
agaaacacctctcaaaatccatatttgctgttgtgattggaagcaatgatatatttggttactttaattcaaaggatcttcaaaaggaaaacactccaca |
433 |
Q |
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| T |
20757177 |
agaatcatctctcaaaatccatatttgctgttgtgattggaagcaatgatatatttggttactttaattcaaaggatcttcaaaagaaaaacactccaca |
20757078 |
T |
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| Q |
434 |
acaatatgtggattccatggcttcctcactaaaagtgcaactacaggtaaacacaatggtttcaaattgtaattaagttactgcat |
519 |
Q |
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| T |
20757077 |
acaatatgtggattccatggcttcctcactaaaagtgcaactacaggtaaacacaatggtttcaaattgtaattaagttactgcat |
20756992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 234 - 484
Target Start/End: Complemental strand, 20752681 - 20752431
Alignment:
| Q |
234 |
catttcttgcagagacaatcaatacctttgacaaagcaagtggactattattcacaagtgcatgaaaaattgacacagcaaacagaagcatatatacttc |
333 |
Q |
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| T |
20752681 |
catttcttgcagagacagtcaatatctttgacaaagcaagtggactattattcacaagtgcatgaaaaattgacacaacaaacagaagcatctacacttc |
20752582 |
T |
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| Q |
334 |
agaaacacctctcaaaatccatatttgctgttgtgattggaagcaatgatatatttggttactttaattcaaaggatcttcaaaaggaaaacactccaca |
433 |
Q |
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| T |
20752581 |
agaaacacctctcaaaatccatatttgctatagtgattggaagcaatgatatatttggttactataactcaatggatcttcaaaagaaaaatactccaca |
20752482 |
T |
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| Q |
434 |
acaatatgtggattccatggcttcctcactaaaagtgcaactacaggtaaa |
484 |
Q |
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| T |
20752481 |
acaatatgtggattccatgacttcctcactaaaaatacaattacaggtaaa |
20752431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 251 - 493
Target Start/End: Complemental strand, 20800535 - 20800293
Alignment:
| Q |
251 |
atcaatacctttgacaaagcaagtggactattattcacaagtgcatgaaaaattgacacagcaaacagaagcatatatacttcagaaacacctctcaaaa |
350 |
Q |
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| T |
20800535 |
atcaatacatttaacagagcaagtggactactattcacaaatgtatgaagaatcgacaaaacaaatagaagtatcaacacttcagaaacacctctcagaa |
20800436 |
T |
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| Q |
351 |
tccatatttgctgttgtgattggaagcaatgatatatttggttactttaattcaaaggatcttcaaaaggaaaacactccacaacaatatgtggattcca |
450 |
Q |
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| T |
20800435 |
tccatcttctttgttgtgattggcaacaatgatatctttgattacttcaattcaaaggatcttcaaaagaaaaacaccccacaacagtttgtcaaatcca |
20800336 |
T |
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| Q |
451 |
tggcttcctcactaaaagtgcaactacaggtaaacacaatggt |
493 |
Q |
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| T |
20800335 |
tggcttcttcactaaaagtgcaactacaggtaagcacaatggt |
20800293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 7 - 101
Target Start/End: Complemental strand, 20757894 - 20757800
Alignment:
| Q |
7 |
atatagtcaagaaattggcactgttaaatcaaagatcagatgacttacgtcaatcgttccaatcttgatccatcaatgttaatctcttgactaaa |
101 |
Q |
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| T |
20757894 |
atatagtcaagaaattggcactgttagatcaaagatcagatgacttacgtcaattgttccaatcttgatccatcaatgtcaatctcttgactaaa |
20757800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 333 - 483
Target Start/End: Original strand, 40640466 - 40640616
Alignment:
| Q |
333 |
cagaaacacctctcaaaatccatatttgctgttgtgattggaagcaatgatatatttggttactttaattcaaaggatcttcaaaaggaaaacactccac |
432 |
Q |
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| T |
40640466 |
cagaaacatctctcaaaatcaatttttgctgttgtgattggaaacaatgatctctttggatattttgagtcatcagaacttcgtaagaaaaataccccac |
40640565 |
T |
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| Q |
433 |
aacaatatgtggattccatggcttcctcactaaaagtgcaactacaggtaa |
483 |
Q |
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| T |
40640566 |
aacagtatgttgattccatgcttttctcactcaaactgcaactacaggtaa |
40640616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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