View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071-Insertion-9 (Length: 440)
Name: NF2071-Insertion-9
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071-Insertion-9 |
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Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 6 - 417
Target Start/End: Complemental strand, 2655892 - 2655481
Alignment:
| Q |
6 |
cagtaatatctcaggaatcacaattgagttctcaatctccatcggtttcttgttcctgtacttgtatggatcacaacatatcaagtagttttattgaatt |
105 |
Q |
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| T |
2655892 |
cagtaatatctcaggattcacaattgagttctcaatctccatcggtttcttgttcctgtacttgtatggatcacaacatatcaagtagttttattgaatt |
2655793 |
T |
|
| Q |
106 |
ttgcataaattcaggtgtttgtgataaaaaatctagtgtagtagaagtagtaggttctgtaaattcaaagattagaagtaataaggttaatgattctctt |
205 |
Q |
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| T |
2655792 |
ttgcataaattcaggtgtttgtgataaaaaatctagtgtagtagaagtagtaggttctgtaaattcaaagattagaagtaataaggttaatgattctctt |
2655693 |
T |
|
| Q |
206 |
gtaattggtaataattctcctcttcaaaaagtcaaaataactcattctcaccaaccatatccatcagaaagtgattgttcatcaagagtgagttcaaaag |
305 |
Q |
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| T |
2655692 |
gtaattggtaataattctcctcttcaaaaagtgaaaataactcattctcaccaaccatatccatcagaaagtgattgttcatcaagagtgagttcaaaag |
2655593 |
T |
|
| Q |
306 |
tcccattcactccaatcagaaaaaggctaaatcctttcacaaagtcaaagaaagttgcaagaaacatggcttgtcaaaaatctttgttgaatgaattttc |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2655592 |
tcccattcactccaatcagaaaaaggctaaatcctttcacaaagtcaaagaaagttgcaagaaacatggcttgtcaaaaatctttgttgaatgacttttc |
2655493 |
T |
|
| Q |
406 |
caacacaacaaa |
417 |
Q |
| |
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|||||||||||| |
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| T |
2655492 |
caacacaacaaa |
2655481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 363 - 413
Target Start/End: Original strand, 2696063 - 2696113
Alignment:
| Q |
363 |
caagaaacatggcttgtcaaaaatctttgttgaatgaattttccaacacaa |
413 |
Q |
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|||||||||||| |||||||||| ||||||||||||| ||||||||||||| |
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| T |
2696063 |
caagaaacatggtttgtcaaaaacctttgttgaatgatttttccaacacaa |
2696113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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