View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_high_104 (Length: 225)
Name: NF2071_high_104
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_high_104 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 7 - 225
Target Start/End: Original strand, 7428774 - 7428992
Alignment:
| Q |
7 |
ctttttacccaaatcaattaggctctatcggattgggtaacactttggccaaaactggcgcaacctaacccatgtacacctctaatttactttttt-cat |
105 |
Q |
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| T |
7428774 |
ctttttacccaaatcaattaggctctatcggattgggtaacactttggccaaaactggcgcaacccaacccatgtacacctctaatttactttttttcat |
7428873 |
T |
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| Q |
106 |
ggcctaatttannnnnnnnacgtgtcaataagtttacaattattttacacatgcatctattcatgtgttgtcacatcaattgaatatgaatgtttttata |
205 |
Q |
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| T |
7428874 |
tgcctaattt-ttttttttacgtgtcaataagtttacaattattttacacatgcatctattcatgtgttgtcacatcaattgaatatgaatgtttttata |
7428972 |
T |
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| Q |
206 |
tttattaattgacgtagcaa |
225 |
Q |
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| T |
7428973 |
tttattaattgacgtagcaa |
7428992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 14717394 - 14717351
Alignment:
| Q |
143 |
aattattttacacatgcatctattcatgtgttgtcacatcaatt |
186 |
Q |
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| T |
14717394 |
aattattttacacatgcatctaatgatgtgttgtcacatcaatt |
14717351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 19117336 - 19117290
Alignment:
| Q |
140 |
tacaattattttacacatgcatctattcatgtgttgtcacatcaatt |
186 |
Q |
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| T |
19117336 |
tacaattattttacacatgcatccaataatgtgttgtcacattaatt |
19117290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 33815846 - 33815800
Alignment:
| Q |
140 |
tacaattattttacacatgcatctattcatgtgttgtcacatcaatt |
186 |
Q |
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| T |
33815846 |
tacaattattttacacatgcatcaaataatgtattgtcacatcaatt |
33815800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 11603356 - 11603274
Alignment:
| Q |
143 |
aattattttacacatgcatctattcatgtgttgtcacatcaat---tgaatatgaa--tgtttttatatttattaattgacgt |
220 |
Q |
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| T |
11603356 |
aattattttaatcatgcatctaatgatgtgttgtcacaccaattagtgaatatgaaagtgttttcatattcattaattgacgt |
11603274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 180
Target Start/End: Complemental strand, 779343 - 779307
Alignment:
| Q |
144 |
attattttacacatgcatctattcatgtgttgtcaca |
180 |
Q |
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| T |
779343 |
attattttacacatgcatctaatcatgtgttgccaca |
779307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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