View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_high_110 (Length: 205)
Name: NF2071_high_110
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF2071_high_110 |
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Alignment Details
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 3818842 - 3818760
Alignment:
Q |
16 |
tggtcatccctaattactgctactattactattattgtttttcttcataagtctattagtactattataatcatttgatcttg |
98 |
Q |
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T |
3818842 |
tggtcatccctaattactgctactattactattattgtttttcttcataagtctattagtactattataatcatttgatcttg |
3818760 |
T |
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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 120 - 193
Target Start/End: Complemental strand, 3818739 - 3818667
Alignment:
Q |
120 |
aacaacttaattgataacatttgtcattaaacaaaatcttttattttaaggacaaaatttaggtgcatattctt |
193 |
Q |
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T |
3818739 |
aacaacttaattgataatatttgtcattaaa-aaaaacttttattttaaggataaaattgatgtgcattttctt |
3818667 |
T |
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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 33422665 - 33422592
Alignment:
Q |
20 |
catccctaattactgctactattactattattgtttttcttcataagtctattagtactattataatcatttgat |
94 |
Q |
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T |
33422665 |
catccctatttactgctactattactattatttttccccttcataagtctactatta-tattatattcatttgat |
33422592 |
T |
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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 120 - 193
Target Start/End: Complemental strand, 3808275 - 3808202
Alignment:
Q |
120 |
aacaacttaattgataacatttgtcattaaacaaaatcttttattttaaggacaaaatttaggtgcatattctt |
193 |
Q |
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T |
3808275 |
aacaacttaattgccaacatttgtcattaaaaaaaaatatatatttttaggacaaaactttggtgcattttctt |
3808202 |
T |
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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 44589559 - 44589484
Alignment:
Q |
19 |
tcatccctaattactgctactattactattattgtttttcttcataagtctattagtactattataatcatttgat |
94 |
Q |
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||||||||||||||||||| | |||||||| ||||||| ||||||||||||| || |||||||||| |||| |||| |
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T |
44589559 |
tcatccctaattactgctattgttactattcttgttttccttcataagtctaatattactattatattcatctgat |
44589484 |
T |
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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 9626615 - 9626542
Alignment:
Q |
21 |
atccctaattactgctactattactattattgttttt--cttcataagtctattagtactattataatcatttg |
92 |
Q |
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T |
9626615 |
atccctaattactgccactattactattattttttttcccttcataagtctattattaatattatattcatttg |
9626542 |
T |
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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 43982081 - 43982154
Alignment:
Q |
20 |
catccctaattactgctactattactattattgtttttcttcataagtctattagtactattataatcatttgat |
94 |
Q |
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|||| ||||||| |||| || ||||||||||| |||| |||||||||||||||| |||||||||| ||||||||| |
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T |
43982081 |
catctctaattagtgctgctgttactattatt-ttttccttcataagtctattattactattatattcatttgat |
43982154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 9641308 - 9641229
Alignment:
Q |
20 |
catccctaattactgctactattactattattgttttt--cttcataagtctattagtactattataatcatttgatctt |
97 |
Q |
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|||||||||||| ||||| ||||||||||||| ||||| |||||||||||||| | || ||||||| ||||||| |||| |
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T |
9641308 |
catccctaattaatgctattattactattattttttttcccttcataagtctataattaatattatattcatttgttctt |
9641229 |
T |
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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 193
Target Start/End: Complemental strand, 38341128 - 38341073
Alignment:
Q |
138 |
atttgtcattaaacaaaatcttttattttaaggacaaaatttaggtgcatattctt |
193 |
Q |
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||||||||||||| |||||| ||| ||||||||| ||||||||||||||| ||||| |
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T |
38341128 |
atttgtcattaaaaaaaatcatttgttttaaggataaaatttaggtgcattttctt |
38341073 |
T |
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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 36309836 - 36309891
Alignment:
Q |
18 |
gtcatccctaattactgctactattactattattgtttttcttcataagtctatta |
73 |
Q |
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|||||| ||||||| | |||||||||||||||| |||| |||||||||||||||| |
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T |
36309836 |
gtcatctctaattatttctactattactattatctttttccttcataagtctatta |
36309891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 4088268 - 4088191
Alignment:
Q |
20 |
catccctaattactgctactattactattattgtttttcttcataagtctattagtactattataatcatttgatctt |
97 |
Q |
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|||||||||||||| |||||||||||||||| ||| |||||||||||||| | |||||||||| | |||||||||| |
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T |
4088268 |
catccctaattactcttactattactattattttttctcttcataagtctactgttactattatatttatttgatctt |
4088191 |
T |
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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 19214182 - 19214247
Alignment:
Q |
18 |
gtcatccctaattactgctactattactattattgtttttcttcataagtctattagtactattat |
83 |
Q |
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|||||||||||||| || |||| |||||||||||||||| |||||| |||||||| || |||||| |
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T |
19214182 |
gtcatccctaattattgttacttttactattattgttttacttcatttgtctattattattattat |
19214247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 35 - 89
Target Start/End: Complemental strand, 16933043 - 16932989
Alignment:
Q |
35 |
ctactattactattattgtttttcttcataagtctattagtactattataatcat |
89 |
Q |
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||||||||||||||||| |||| |||||||||||||||| |||| ||||| |||| |
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T |
16933043 |
ctactattactattatttttttccttcataagtctattattactgttatattcat |
16932989 |
T |
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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 27342524 - 27342467
Alignment:
Q |
127 |
taattgataacatttgtcattaaacaa-aatcttttattttaaggacaaaatttaggt |
183 |
Q |
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|||||| ||||||||||||||||| || |||| ||||||||||||| ||||| ||||| |
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T |
27342524 |
taattgctaacatttgtcattaaagaagaatcatttattttaaggataaaatgtaggt |
27342467 |
T |
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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 27343008 - 27342953
Alignment:
Q |
41 |
ttactattattgtttttcttcataagtctattagtac--tattataatcatttgat |
94 |
Q |
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|||||||||||||||||||||||||||| | || ||| ||||||| ||||||||| |
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T |
27343008 |
ttactattattgtttttcttcataagtcgactattactatattatactcatttgat |
27342953 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 11085351 - 11085419
Alignment:
Q |
26 |
taattactgctactattactattattgtttttcttcataagtctattagtactattataatcatttgat |
94 |
Q |
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|||||| || ||||| |||||||||||||| ||||| ||| | ||||| |||||||||| ||||||||| |
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T |
11085351 |
taattaatgttactactactattattgtttatcttcgtaaatatattattactattatattcatttgat |
11085419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 18034185 - 18034241
Alignment:
Q |
41 |
ttactattattgtttttcttcataagtctattagtactattataatcatttgatctt |
97 |
Q |
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||||||||||| ||| ||||| ||||| ||||| |||||||||| |||||||||||| |
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T |
18034185 |
ttactattattttttctcttcttaagtttattattactattatattcatttgatctt |
18034241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 18034286 - 18034346
Alignment:
Q |
127 |
taattgataacatttgtcattaaacaaaatcttttattttaaggacaaaatttaggtgcat |
187 |
Q |
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|||||| ||| || ||| |||||| |||||| ||||||||||||| |||| |||||||||| |
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T |
18034286 |
taattgttaatatgtgttattaaaaaaaatcctttattttaaggagaaaacttaggtgcat |
18034346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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