View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_high_15 (Length: 532)
Name: NF2071_high_15
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 109 - 504
Target Start/End: Complemental strand, 5342597 - 5342202
Alignment:
| Q |
109 |
ataagagaatgacatctaaccctttgataccaggcacaatcataaaatcttataaaagctattaattcttaaaaaccaaataaccatgaactcgtatcag |
208 |
Q |
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| T |
5342597 |
ataagagaatgacatctaaccctttgataccaggcacaatcataaaatcttataaaagctattaattcttaaaaaccaaataaccatgaactcgtatcag |
5342498 |
T |
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| Q |
209 |
tcataagtatcgtgtaactgtcgaggtctcttgaaccttacaaaaggagttgagactcaatacaacatcgatcacctcctttgcagattagctcgtattg |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5342497 |
tcataagtatcgtgtaactgtcgaggtctcttgaaccttacaaaacgagttgagactcaatacaacatcgatcacctcctttgcagattagctcgtattg |
5342398 |
T |
|
| Q |
309 |
ggatatcagctgcatatgttgaattgaaaagggggaaaaacacggcaccactgtcattttaggcatttttgcaaaaatagttgatttgttgtagacttgc |
408 |
Q |
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| T |
5342397 |
ggatatcagctgcatatgtggaattgaaaggggggaaaaacacggcaccactgtcattttaggcatttttgcaaaaatagttgatttgttgtagacttgc |
5342298 |
T |
|
| Q |
409 |
tcaatcgtccctctaacccgtgagttaacccaacttgataactagagtcttcaactcatacgagtgtatgaatcaactagataagacaaccctggt |
504 |
Q |
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| T |
5342297 |
tcaatcgtccctctaacccgtgagttaacccaacttgataactagagtcttcaactcatacgagtgtatgaatcaactagataagacaaccctggt |
5342202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 5342727 - 5342620
Alignment:
| Q |
15 |
aagaaatagttgtctccagctccatccagctctctctcctataaaaagtataaacaaatttccaaaagcaatcagtatacatactgctaagagtataaga |
114 |
Q |
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| T |
5342727 |
aagaaatagttgtctccagctccatccagctctctctcctataaaaagtataaacaaatttccaaaagcaatcagt----atactgctaagagtataaga |
5342632 |
T |
|
| Q |
115 |
gaatgacatcta |
126 |
Q |
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|||||||||||| |
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| T |
5342631 |
gaatgacatcta |
5342620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 15 - 434
Target Start/End: Complemental strand, 43479997 - 43479589
Alignment:
| Q |
15 |
aagaaatagttgtctccagctccatccagctctctctcctataaaaagtataaacaaatttccaaaagcaatcagtatacatactgctaagagtataaga |
114 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||| |||||||||||||||| || ||||||||||| || | |
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| T |
43479997 |
aagaaatagttgtctccagctccatcaagctctctctcctgtaaaa-gtataaacaaatgcccaaaagcaatcagtagac----tgctaagagtacaaaa |
43479903 |
T |
|
| Q |
115 |
gaatgacatctaaccctttgataccaggcacaatcataaaatcttataaaagctattaattcttaaaaaccaaataaccatgaactcgtatcagtcataa |
214 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | |||| ||||||||||||||||||||| ||||||| ||||||| |
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| T |
43479902 |
gaatgacatctaaccctttgatactaggcacaatcataaaattttataaaagctctcaatttctaaaaaccaaataaccatgaattcgtatcggtcataa |
43479803 |
T |
|
| Q |
215 |
gtatcgtgtaactgtcgaggtctcttgaaccttacaaaaggag-ttgagactcaatacaacatcgatcacctcctttgcagattagctcgtattgggata |
313 |
Q |
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|||| ||||| || ||||| ||| ||||||||||||||||||| ||||||||| ||| | |||||||||||||||||| |||||||||||| |||||||| |
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| T |
43479802 |
gtattgtgtagctatcgagatcttttgaaccttacaaaaggagtttgagactcgatatagcatcgatcacctcctttggagattagctcgtgttgggata |
43479703 |
T |
|
| Q |
314 |
tcagctgcatatgttgaattgaaaag---ggggaaaaacacggcaccactgtcattttaggcatttttgcaaaaatagttgatttgttgtagacttgctc |
410 |
Q |
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||||||| || ||| ||||||||||| || ||||||||||||||| ||||||||||||||| |||| ||||||| ||||||||||| || |
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| T |
43479702 |
tcagctgtatttgtggaattgaaaagaaaaggaaaaaacacggcaccattgtcattttaggcatatttggaaaaata---------ttgtagacttgttc |
43479612 |
T |
|
| Q |
411 |
aatcgtccctctaacccgtgagtt |
434 |
Q |
| |
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|||||| ||||||||||||||||| |
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| T |
43479611 |
aatcgt-cctctaacccgtgagtt |
43479589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 443 - 499
Target Start/End: Complemental strand, 43479532 - 43479477
Alignment:
| Q |
443 |
ttgataactagagtcttcaactcatacgagtgtatgaatcaactagataagacaacc |
499 |
Q |
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||||||||||||||||| |||||| | |||||||||| ||||||||||||||||||| |
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| T |
43479532 |
ttgataactagagtcttaaactcaaa-gagtgtatgactcaactagataagacaacc |
43479477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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