View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2071_high_19 (Length: 523)
Name: NF2071_high_19
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_high_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 13 - 506
Target Start/End: Original strand, 36738757 - 36739250
Alignment:
| Q |
13 |
aatattacaatttaagaacagttaactgatgtataatagaaagatataaacaatacggcatacaaacacaaacatcaatccatgatctatcaacaacaca |
112 |
Q |
| |
|
|||| ||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
36738757 |
aatactacaacttaagaacatttaactgatgtatagtagaaagatataaacaatacggcatacaaacacaaacattaatccatgatctatcaacaacaca |
36738856 |
T |
|
| Q |
113 |
ataacgtaagaacttggcaaatggatttaacgctgaatcaacaagcagaaaaacaaatactttttcaattagacaaaaatgaaaacagaaacaatatata |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
36738857 |
ataacgtaagaacttggcaaatggatttaacgctgaatcaacaagtagaaaaacaaatactttttcaattagacaaaa-tgaaaacagaaacaatatata |
36738955 |
T |
|
| Q |
213 |
tttattacaatacataatacaacttggtctcaccagttttctcaggagtggcatttt-tcgtcttcatgaaagaaactggagtttctgaagcagattcat |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
36738956 |
tttattacaatacataatacaacttggtctcaccagttttctcaggagtggcattttttcgtcttcatgaaagaaactggagtttttgaagcagattaat |
36739055 |
T |
|
| Q |
312 |
tggaccttttctttcccttgtcaaccttcaaaagtaaaagacaaattgtctcaaatcaccataacgattaaaacataaaataacaccttgataacaaatg |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
36739056 |
tggaccttttctttcccttgtcaaccttcaaaagtaaaagacaaattgtatcaaatcaccataacaattaaaacataaaataacaccttgatagcaaatg |
36739155 |
T |
|
| Q |
412 |
taccattaccttcttcacagtttcatcagaatcttcatctttctcctcctttggatcaacaaccttcgcgtcttctgcaggtgcaacctccatgg |
506 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36739156 |
taccattaccgtcttcacagtttcatcataatcttcatctttctcctcctttggatcaacaaccttcgcatcttctgcaggtgcaacctccatgg |
36739250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 13 - 374
Target Start/End: Complemental strand, 35981355 - 35981003
Alignment:
| Q |
13 |
aatattacaatttaagaacagttaactgatgtataatagaaagatataaacaatacggcatacaaacacaaacatcaatccatgatctatcaacaacaca |
112 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||| |||||||||||||||||| | |||||||||| ||| |||||| ||||||| |
|
|
| T |
35981355 |
aatactacaatttaagaacagtcaactgatgtatagtagaaagatataaacaatgcagcatacaaacgcaagcatcaa---------------caacaca |
35981271 |
T |
|
| Q |
113 |
ataacg-taagaacttggcaaatggatttaacgctgaatcaacaagcagaaaaa----caaatactttttcaattagacaaaaatgaaaacagaaacaat |
207 |
Q |
| |
|
|||| ||||||||| ||||||| ||| ||||||| ||||||| ||||| ||||||||| | |||||| ||||||||||||||||||||||| |
|
|
| T |
35981270 |
ataaatataagaacttatagaatggatccaacactgaatcgacaagcaaaaaaaaaaacaaatacttgtccaattatacaaaaatgaaaacagaaacaat |
35981171 |
T |
|
| Q |
208 |
atatatttattacaatacataatacaacttggtctcaccagttttctcaggagtggcatttttcgtcttcatgaaagaaactggagtttctgaagcagat |
307 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||| |||||| |||||||||||||||||||| | ||| || ||||| |||||||| |||||||||| |
|
|
| T |
35981170 |
atatatttattgcaaaacataatacaacttggtcttaccagtcttctcaggagtggcattttttgatttcttgctagaaattggagtttttgaagcagat |
35981071 |
T |
|
| Q |
308 |
tcattggaccttttctttcccttgtcaaccttcaaaagtaaaagacaa-attgtctcaaatcaccata |
374 |
Q |
| |
|
||||||| ||| |||||||||| |||||||||||||| ||||||||| ||| || |||||||||||| |
|
|
| T |
35981070 |
tcattgggcctcttctttccctggtcaaccttcaaaacaaaaagacaagattatcccaaatcaccata |
35981003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 208 - 344
Target Start/End: Original strand, 28943016 - 28943149
Alignment:
| Q |
208 |
atatatttattacaatacataatacaacttggtctcaccagttttctcaggagtggcatttttcgtcttcatgaaagaaactggagtttctgaagcagat |
307 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||| | |||||||||||||| |||||||||| |
|
|
| T |
28943016 |
atatatttattacaatatataatacaacttggtctcaccagttttctcaggagtggcattttttgttttctt---agaaactggagtttttgaagcagat |
28943112 |
T |
|
| Q |
308 |
tcattggaccttttctttcccttgtcaaccttcaaaa |
344 |
Q |
| |
|
||||||| ||| |||||||||| ||| |||||||||| |
|
|
| T |
28943113 |
tcattgggcctcttctttccctggtccaccttcaaaa |
28943149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 433 - 496
Target Start/End: Original strand, 28943595 - 28943658
Alignment:
| Q |
433 |
ttcatcagaatcttcatctttctcctcctttggatcaacaaccttcgcgtcttctgcaggtgca |
496 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||||||||| | | || |||||||||| |
|
|
| T |
28943595 |
ttcatcagaatcttcatctttcacatcctttggatcaacaaccttcacatgttttgcaggtgca |
28943658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 10900 times since January 2019
Visitors: 8059