View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_high_23 (Length: 480)
Name: NF2071_high_23
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Complemental strand, 29892881 - 29892417
Alignment:
| Q |
1 |
gttattatttatattatgaatgttgttttacttcttcggattgtatttgtaaaggtatatttttctttgagttaggtatattgttgaccttcctcggcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29892881 |
gttattatttatattatgaatgttgttttacttcttcggattgtatttgtaaaggtatatttttctttgagttaggtatattgttgaccttcctcggcca |
29892782 |
T |
|
| Q |
101 |
ttgagtggtttgtttgtgggttgagtacaccttgtactcttcatttttaatataaattatattttcatgctnnnnnnnntttacactgttaagtgatgaa |
200 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||| |
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| T |
29892781 |
ttgagtggtttgtttgagggttgagtacaccttgtactcttcatttttaatataaattatattttcatgataaaaaaaatttacattgttaagtgatgaa |
29892682 |
T |
|
| Q |
201 |
atattatatacacaaatttgtaaaataaattgaataagaatatgtttaccattgtattttaaagatgaatgattaatttcacacacaaaattttttnnnn |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29892681 |
atattatatacacaaatttgtaaaataaattgaataagaatatgtttaccattgtattttaaagatgaatgattaatttcacacacaaaatttttaaaaa |
29892582 |
T |
|
| Q |
301 |
nnncttaataaagttctttttataggcaaaccattaacctctcaaaatgactctcccaacctccttcatcttttcattttccaaaatgatacacctaaaa |
400 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29892581 |
aaacttaataaagttgtttttataggcaaaccattaacctctcaaaatgactctcccaacctccttcatcttttcattttccaaaatgatacacctaaaa |
29892482 |
T |
|
| Q |
401 |
aatctataacaacctcaaattctaaacatactcatacacaccctcaccaaattatgaacaaatct |
465 |
Q |
| |
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| T |
29892481 |
aatctataacaacctcaaattctaaacatactcatacacaccctcaccaaattatgaacaaatct |
29892417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 3 - 165
Target Start/End: Complemental strand, 29887506 - 29887343
Alignment:
| Q |
3 |
tattatttatattatgaatgttgttttacttcttcggattgtatttgtaaaggtatatttttctttgagttaggtatattgttgaccttcctcggccatt |
102 |
Q |
| |
|
||||||||||||||||||||||||||| ||| || |||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||| |||| |
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| T |
29887506 |
tattatttatattatgaatgttgttttgcttttttggattgtatttgtagaggtatatttttctttgagttaggtatatttttgtccttcctcggtcatt |
29887407 |
T |
|
| Q |
103 |
gagtggtttgtttgtgggttgagtacaccttgtactcttcat-ttttaatataaattatatttt |
165 |
Q |
| |
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||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| |
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| T |
29887406 |
gagtggtttgtttgtgggttgagtacatcttgaactcttcattttttaatataaattatatttt |
29887343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 199 - 465
Target Start/End: Complemental strand, 29887286 - 29887005
Alignment:
| Q |
199 |
aaatattatatacacaaatttgtaaaataaattgaataagaat-----atgtttaccattgtattttaaagatgaatgattaatttcacacacaaaatt- |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||| ||||| |||| | |
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| T |
29887286 |
aaatattatatacacaaatttgtaaaataaattgaataagaatgatagatgattaccaatgtattttaaagatgaatgattaattttacacaaaaaaata |
29887187 |
T |
|
| Q |
293 |
--------ttttnnnnnnncttaataaagttctt-tttataggcaaaccattaacctctcaaaatgactctcccaacctccttcatcttttcattttcca |
383 |
Q |
| |
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|||| ||||||||| || || ||| |||| ||||| ||| |||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
29887186 |
gtttaaaattttaaaagatcttaataaaattgttatttttaggtaaacccttatcctctcaaaaatactctcctaacctccttcatcttttcattttcca |
29887087 |
T |
|
| Q |
384 |
aaatgatacacctaaaaaatctataacaacctcaaattctaaacatactcatacacaccctcaccaaattatgaacaaatct |
465 |
Q |
| |
|
||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||| ||||| ||||||||||| |
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| T |
29887086 |
aaacgatacacctcaaaaatctataacaacctcaaacaataaacatactcatacacacccacacaaaattctgaacaaatct |
29887005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 304 - 464
Target Start/End: Complemental strand, 29889524 - 29889370
Alignment:
| Q |
304 |
cttaataaagttctttttataggcaaaccattaacctctcaaaatgactctcccaacctccttcatcttttcattttccaaaatgatacacctaaaaaat |
403 |
Q |
| |
|
|||||||||||| ||||| |||||||| | ||| |||||| || |||| ||| |||||||||||||||| ||||||||| || ||||||||| |||||| |
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| T |
29889524 |
cttaataaagttgtttttttaggcaaatccttatcctctcgtaaagactatcctaacctccttcatcttt-cattttccataacgatacacctcaaaaat |
29889426 |
T |
|
| Q |
404 |
ctataacaacctcaaattctaaacatactcatacacaccctcaccaaattatgaacaaatc |
464 |
Q |
| |
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|||||||||||||||| | ||||||||| ||||||| ||||||||| ||||||||| |
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| T |
29889425 |
ctataacaacctcaaact-----catactcatgcacacccacaccaaatttcgaacaaatc |
29889370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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