View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2071_high_28 (Length: 452)
Name: NF2071_high_28
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_high_28 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 157; Significance: 3e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 214 - 433
Target Start/End: Complemental strand, 32441478 - 32441258
Alignment:
| Q |
214 |
tatgtcccatcatccattttattaatgataaccggtgatataacatatc-atatttgtttacacttaaaaataataactatgttagttggatttgacaaa |
312 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
32441478 |
tatgtcacatcatccattttattaatgataaccagtgatataacatatggatatttgtttacacttaaaaataataactctgttagttagatttgacaaa |
32441379 |
T |
|
| Q |
313 |
taagcgatgttatagcagtcgagtgaggaagcaaattatttctcaagctcactagctaaaaatatggaccgtcaaaggcttgaaaccgagtaaccaacat |
412 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||| |||||||||||||||| || |||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
32441378 |
taagcgatgctatagcagtcgagtgatgaagcaaattctttctcaagctcactaactcaaaatatggaatgtcaaaggcttgaaaccgagtcaccaacat |
32441279 |
T |
|
| Q |
413 |
tatgagactaaataatgacac |
433 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
32441278 |
aatgagactaaataatgacac |
32441258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 13 - 189
Target Start/End: Complemental strand, 32441677 - 32441500
Alignment:
| Q |
13 |
atactcaaaataaaaataaattgttagttttattttagatagggtatgcaaattnnnnnnnnnntgtagtgttaaatggagtcggcgagaagtaattgtn |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
32441677 |
atactcaaaataaaaataaattgttagttttattttagatagtgtatgtaaattaaaaaaaaaatgtagtgttaaatgaagtcggcgagaagtaattgta |
32441578 |
T |
|
| Q |
113 |
nnnnnnn-tgtaattttatattatccattttatcatcaactagttaattaattaattgtgtcacaacatccattttac |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
32441577 |
aaataaaatgtaattttatattatccattttatcatcaactagttaattaattaattgtgtcacatcatccattttac |
32441500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 13243 times since January 2019
Visitors: 8270