View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_high_3 (Length: 796)
Name: NF2071_high_3
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF2071_high_3 |
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[»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 72 - 433
Target Start/End: Original strand, 26073095 - 26073463
Alignment:
Q |
72 |
atggaaagagaatcggtttcaatgtgggagcttagttttgttgttccacctaatcacggtaatgctttctttgcttactttgttttccgtaattaagcac |
171 |
Q |
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T |
26073095 |
atggaaagagaatcggtttcaatgtgggagcttagttttgttgttccacctaatcacggtaatgctttctttgcttactttgttttccgtaattaagcag |
26073194 |
T |
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Q |
172 |
tgacacgaacattggacatgacaatatactagacacaagtaataatttaagaaagtagaagtaattgaatgtaattacatgtgtttgacaagtgtcaggc |
271 |
Q |
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T |
26073195 |
tgacacgaacattggacatgacaatatactagacacaagtaataatttaagaaagtagaagtaattgaatgtaattacatatgtttgataagtgtcagac |
26073294 |
T |
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Q |
272 |
accacagatatatctttgatcagaaatgtgt---------cttttactctacttttatgtttgtttctgtgtttccccagttgtttgtttaaaagtcaaa |
362 |
Q |
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T |
26073295 |
accacagatacatctttgatcagaaatgtgtcagttgctacttttactctacttttatgtttgttt-tgtgtttccccagttgtttgtttaaaagtcaaa |
26073393 |
T |
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Q |
363 |
aggtgtactttttaacaacttgtcagtttgatagagtagataaagttactcaaaaaacacatgtggaaaag |
433 |
Q |
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T |
26073394 |
aggtgtactttttaacaacttgtcagtttgatagagttgat-aagttactcaaaaaacacatgtggaaaag |
26073463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 478 - 767
Target Start/End: Original strand, 26073508 - 26073797
Alignment:
Q |
478 |
cttctggtataagttagaatcagcatatgcagttcattctttttagtgaatgaagaataagcttaccttaatttagaacctagaagannnnnnnnggtct |
577 |
Q |
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T |
26073508 |
cttctggtataacttagaatcagcatatgcagttcattcattttagtgaatgaagaataagcttaccttaatttagaacctagaagattttttttggtct |
26073607 |
T |
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Q |
578 |
tgaacctccggttcctggggaaaggggttttggtaacgtggagttcaactatgaggtagataagtaaagtttgaccaaagattagtctaatcagggtttg |
677 |
Q |
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T |
26073608 |
tgaacctccggttcctggggaaaggggttttggtaaggtggagttcaactatgaggtagataagtaaagtttgaccaaagattagtctaatcagggtttg |
26073707 |
T |
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Q |
678 |
agaacctagaagttaatcttatccaagttatcaatgtgaaccacttacaagctacaagttacttataagttagaagttaattaaaactgg |
767 |
Q |
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T |
26073708 |
agaacctagaagttaatcttatccaagttatcaatgtgaaccacttacaagctacaagttacttataagttagaagttaattaaaactgg |
26073797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 28735865 - 28735820
Alignment:
Q |
210 |
gtaataatttaagaaagtagaagtaattgaatgtaattacatgtgt |
255 |
Q |
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T |
28735865 |
gtaataatttaagaaaatagaagtgattgaatgtaattatatgtgt |
28735820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 18542270 - 18542218
Alignment:
Q |
203 |
gacacaagtaataatttaagaaagtagaagtaattgaatgtaattacatgtgt |
255 |
Q |
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T |
18542270 |
gacaccagtaataatttgagaaaatacaagtaattgaatgtaatcacatgtgt |
18542218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 22556236 - 22556280
Alignment:
Q |
201 |
tagacacaagtaataatttaagaaagtagaagtaattgaatgtaa |
245 |
Q |
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T |
22556236 |
tagacacaggtaataatttaagaaaatagaagtgattgaatgtaa |
22556280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 398637 - 398679
Alignment:
Q |
203 |
gacacaagtaataatttaagaaagtagaagtaattgaatgtaa |
245 |
Q |
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T |
398637 |
gacacaaataataatttaagaaaattgaagtaattgaatgtaa |
398679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 2468525 - 2468479
Alignment:
Q |
210 |
gtaataatttaagaaagtagaagtaattgaatgtaattacatgtgtt |
256 |
Q |
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T |
2468525 |
gtaataatttaagaaaatggaagtaattgaatgtaaccacatgtgtt |
2468479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 201 - 255
Target Start/End: Complemental strand, 10666681 - 10666627
Alignment:
Q |
201 |
tagacacaagtaataatttaagaaagtagaagtaattgaatgtaattacatgtgt |
255 |
Q |
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||||||| | ||||||||| ||||| |||||||||||||||| |||| ||||||| |
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T |
10666681 |
tagacactaataataatttgagaaaatagaagtaattgaatgaaatttcatgtgt |
10666627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 7422169 - 7422215
Alignment:
Q |
210 |
gtaataatttaagaaagtagaagtaattgaatgtaattacatgtgtt |
256 |
Q |
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T |
7422169 |
gtaataatttgagaaaatagaagtgattgaatgtaattatatgtgtt |
7422215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 27131725 - 27131679
Alignment:
Q |
210 |
gtaataatttaagaaagtagaagtaattgaatgtaattacatgtgtt |
256 |
Q |
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T |
27131725 |
gtaataatttaagaaaatggaagtaattgaatgtaaccacatgtgtt |
27131679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 256
Target Start/End: Original strand, 43397111 - 43397152
Alignment:
Q |
215 |
aatttaagaaagtagaagtaattgaatgtaattacatgtgtt |
256 |
Q |
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T |
43397111 |
aatttaagaaaatagcagtaattgaatgtaatcacatgtgtt |
43397152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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