View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2071_high_32 (Length: 436)

Name: NF2071_high_32
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2071_high_32
NF2071_high_32
[»] chr3 (7 HSPs)
chr3 (13-421)||(9346849-9347261)
chr3 (13-251)||(9356259-9356498)
chr3 (295-421)||(9356978-9357103)
chr3 (295-362)||(9432457-9432523)
chr3 (295-362)||(9401964-9402030)
chr3 (301-362)||(9420209-9420269)
chr3 (356-421)||(9432533-9432600)


Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 13 - 421
Target Start/End: Original strand, 9346849 - 9347261
Alignment:
Q  13 aatatataggattgttataaatgcaacaactgtgaggttaatgtt----ttgtttgctacagaaacttaacattctgttgttgtattttatggtttatta 108  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9346849 aatatataggattgttataaatgcaacagctgcgaggttaatgtttgttttgtttgctacagaaacttaacattctgttgttgtattttatggtttatta 9346948  T
Q  109 aaaatctttggatcattgtcattctacaaatgtttgggggaaaataaccattatatggaagaccagtcgaattgtcctcacacttgcaagaaatgctcct 208  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9346949 aaaatctttggaccattgtcattctacgaatgtttgggggaaaataaccattatatggaagaccagtcgaattgtcctcacacttgcaagaaatgctcct 9347048  T
Q  209 tttgagtttcaaatgttagaactcaataccttatttaattcaaaaccaatggaaaaatcaaatcaagacttgggtggtgtggatcgacattgattgttac 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9347049 tttgagtttcaaatgttagaactcaataccttatttaattcaaaaccaatggaaaaatcaaatcaagacttgggtggtgtggatcgacattgattgttac 9347148  T
Q  309 accttatcatacaaatcaccccctcaaaaataaaatgcatgaaacatatttagaagtggagatacttatttagaaaacatatatgctacaaaagccatat 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  9347149 accttatcatacaaatcaccccctcaaaaataaaatgcatgaaacatatttagaagtgcagatacttatttagaaaacatatgtgctacaaaagccatat 9347248  T
Q  409 tcgatgcaacaac 421  Q
    |||||||||||||    
T  9347249 tcgatgcaacaac 9347261  T

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Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 9356259 - 9356498
Alignment:
Q  13 aatatataggattgttataaatgcaacaactgtgaggttaatgttttgtttgctacagaaacttaacattctgttgttgtattttatggtttattaaaaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9356259 aatatataggattgttataaatgcaacaactgtgaggttaatgttttgtttgctacagaaacttaacattctgttgttgtattttatggtttattaaaaa 9356358  T
Q  113 tctttggatcattgtcattctacaaatgtttgggg-gaaaataaccattatatggaagaccagtcgaattgtcctcacacttgcaagaaatgctcctttt 211  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9356359 tctttggatcattgtcattctacgaatgtttggggcgaaaataaccattatatggaagaccagtcgaattgtcctcacacttgcaagaaatgctcttttt 9356458  T
Q  212 gagtttcaaatgttagaactcaataccttatttaattcaa 251  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  9356459 gagtttcaaatgttagaactcaataccttatttaattcaa 9356498  T

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Target: chr3; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 295 - 421
Target Start/End: Original strand, 9356978 - 9357103
Alignment:
Q  295 acattgattgttacaccttatcatacaaatcaccccctcaaaaataaaatgcatgaaacatatttagaagtggagatacttatttagaaaacatatatgc 394  Q
    |||||||||||| || ||||||||||| || | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9356978 acattgattgttgcatcttatcatacagattatcccctcaaaa-taaaatgcatgaaacatatttagaagtggagatacttatttagaaaacatatatgc 9357076  T
Q  395 tacaaaagccatattcgatgcaacaac 421  Q
    |||||||||||||||||||||||||||    
T  9357077 tacaaaagccatattcgatgcaacaac 9357103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 295 - 362
Target Start/End: Original strand, 9432457 - 9432523
Alignment:
Q  295 acattgattgttacaccttatcatacaaatcaccccctcaaaaataaaatgcatgaaacatatttaga 362  Q
    ||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  9432457 acattgattgttacatcttatcatacaaatcaccccctc-aaaacaaaatgcatgaaacatatttaga 9432523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 295 - 362
Target Start/End: Original strand, 9401964 - 9402030
Alignment:
Q  295 acattgattgttacaccttatcatacaaatcaccccctcaaaaataaaatgcatgaaacatatttaga 362  Q
    ||||||||||||||| ||||||||||||||||||||||| |||| |||||| ||||||||||||||||    
T  9401964 acattgattgttacatcttatcatacaaatcaccccctc-aaaacaaaatgtatgaaacatatttaga 9402030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 362
Target Start/End: Original strand, 9420209 - 9420269
Alignment:
Q  301 attgttacaccttatcatacaaatcaccccctcaaaaataaaatgcatgaaacatatttaga 362  Q
    ||||||||| |||||||||||||| ||| |||| |||||||||||||| ||| |||||||||    
T  9420209 attgttacatcttatcatacaaattacctcctc-aaaataaaatgcattaaatatatttaga 9420269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 421
Target Start/End: Original strand, 9432533 - 9432600
Alignment:
Q  356 atttagaagtggagatacttatttagaaa--acatatatgctacaaaagccatattcgatgcaacaac 421  Q
    ||||||||||| ||||||||||||| |||  |||||| |||||||||| ||| ||| |||||||||||    
T  9432533 atttagaagtgcagatacttatttacaaagaacatatttgctacaaaatccagatttgatgcaacaac 9432600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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