View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_high_35 (Length: 429)
Name: NF2071_high_35
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF2071_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 22 - 416
Target Start/End: Complemental strand, 35270300 - 35269907
Alignment:
Q |
22 |
ttgctaaattagaccatataaaattgggctccctaaattgaaatagaataagaatcgagtttgtaacnnnnnnnnnngaggataaaaataaagatttcca |
121 |
Q |
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T |
35270300 |
ttgctaaattagaccatataaatttgggctccctaaattgaaatagaataagaatcgagtttgtaacaaaaaaaaa-gaggataaaaataaagatttcca |
35270202 |
T |
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Q |
122 |
actggttcctctgaaagtaataaatacttttatgtttcaagtatttcagcttaaagtttttgggtttgattgtcatgcagcaagtnnnnnnncttattgc |
221 |
Q |
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T |
35270201 |
actggttcctctgaaagtaataaatacttttatgtttcaagtatttcagcttaaagtttttgggtttgattgtcatgcagcaagtaaaaaaacttattgc |
35270102 |
T |
|
Q |
222 |
ataaagagaaagtaaataatatgtgtacaatttattacagtgcctggaattgttgattcttgagaatggccaaacacatagcagtacacatgcttctgat |
321 |
Q |
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T |
35270101 |
ataaagagaaagtaaataatatgtgtacaatttattacagtgcctggaattgttgattcttgagaatggccaaacacatagcagtacacatgcttctgat |
35270002 |
T |
|
Q |
322 |
ttatcaattactggactagcagtggctcaaaatgaaaccatcacatcagctagcgatgattctgtggtgaagatatggagatgaagttattgtct |
416 |
Q |
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T |
35270001 |
ttatcaattactggactagcagtggctcaaaatgaaaccatcacatcagctagcgatgattctgtggtgaagatatggagatgaagttattgtct |
35269907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 236 - 298
Target Start/End: Complemental strand, 35274880 - 35274818
Alignment:
Q |
236 |
aataatatgtgtacaatttattacagtgcctggaattgttgattcttgagaatggccaaacac |
298 |
Q |
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T |
35274880 |
aatactatgtgtacaatttattgcagtgcttggaaatgttgattcttgagattggccaaacac |
35274818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 218 - 286
Target Start/End: Complemental strand, 35252822 - 35252754
Alignment:
Q |
218 |
ttgcataaagagaaagtaaataatatgtgtacaatttattacagtgcctggaattgttgattcttgaga |
286 |
Q |
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||||||||| || ||||||||||| |||| |||| ||||| |||||| ||||||||||||||||||||| |
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T |
35252822 |
ttgcataaatagtaagtaaataatctgtggacaacttattgcagtgcttggaattgttgattcttgaga |
35252754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 215 - 283
Target Start/End: Complemental strand, 35277162 - 35277094
Alignment:
Q |
215 |
ttattgcataaagagaaagtaaataatatgtgtacaatttattacagtgcctggaattgttgattcttg |
283 |
Q |
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T |
35277162 |
ttattgcatagatggaaagtaaataatctgtgtacaatttattgcagggcatggaattgttgactcttg |
35277094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 286
Target Start/End: Complemental strand, 35240570 - 35240502
Alignment:
Q |
218 |
ttgcataaagagaaagtaaataatatgtgtacaatttattacagtgcctggaattgttgattcttgaga |
286 |
Q |
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||||||||| || ||||||||||| |||| |||| ||||| |||||| |||||||||||| | |||||| |
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T |
35240570 |
ttgcataaatagtaagtaaataatctgtggacaacttattgcagtgcttggaattgttgactgttgaga |
35240502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 365 - 409
Target Start/End: Complemental strand, 35252666 - 35252622
Alignment:
Q |
365 |
catcagctagcgatgattctgtggtgaagatatggagatgaagtt |
409 |
Q |
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T |
35252666 |
catcagctagcagtgattctgtggtgaagatatggaaatgaagtt |
35252622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 283
Target Start/End: Complemental strand, 35282747 - 35282681
Alignment:
Q |
217 |
attgcataaagagaaagtaaataatatgtgtacaatttattacagtgcctggaattgttgattcttg |
283 |
Q |
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|||||||||| ||||| || |||| ||||||||||||||| |||||| ||||||||| || ||||| |
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T |
35282747 |
attgcataaatggaaagcaactaatctgtgtacaatttattgcagtgcatggaattgtggactcttg |
35282681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 409
Target Start/End: Complemental strand, 35240414 - 35240370
Alignment:
Q |
365 |
catcagctagcgatgattctgtggtgaagatatggagatgaagtt |
409 |
Q |
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||||||||||| | ||||||||||||||||||||| |||||||| |
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T |
35240414 |
catcagctagcagtaattctgtggtgaagatatggaaatgaagtt |
35240370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 285
Target Start/End: Complemental strand, 27410646 - 27410580
Alignment:
Q |
219 |
tgcataaagagaaagtaaataatatgtgtacaatttattacagtgcctggaattgttgattcttgag |
285 |
Q |
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|||||||| |||||||||||||| ||||| | |||||| |||||| || |||| |||||||||||| |
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T |
27410646 |
tgcataaatagaaagtaaataatttgtgtcaagtttattgcagtgcatgaaatttttgattcttgag |
27410580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 285
Target Start/End: Original strand, 37963949 - 37964015
Alignment:
Q |
219 |
tgcataaagagaaagtaaataatatgtgtacaatttattacagtgcctggaattgttgattcttgag |
285 |
Q |
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|||||||| |||||||||||||| ||||| | |||||| |||||| ||||||| || ||||||||| |
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T |
37963949 |
tgcataaatagaaagtaaataatttgtgtctagtttattgcagtgcatggaattttttattcttgag |
37964015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 285
Target Start/End: Original strand, 27320075 - 27320141
Alignment:
Q |
219 |
tgcataaagagaaagtaaataatatgtgtacaatttattacagtgcctggaattgttgattcttgag |
285 |
Q |
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|||||||| |||||||||||||| ||||| | |||||| |||||| ||||||| || ||||||||| |
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T |
27320075 |
tgcataaatagaaagtaaataatttgtgtctagtttattgcagtgcatggaattttttattcttgag |
27320141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 285
Target Start/End: Original strand, 27361806 - 27361872
Alignment:
Q |
219 |
tgcataaagagaaagtaaataatatgtgtacaatttattacagtgcctggaattgttgattcttgag |
285 |
Q |
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|||||||| |||||||||||||| ||||| | |||||| |||||| ||||||| || ||||||||| |
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T |
27361806 |
tgcataaatagaaagtaaataatttgtgtctagtttattgcagtgcatggaattttttattcttgag |
27361872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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