View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_high_37 (Length: 417)
Name: NF2071_high_37
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_high_37 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 14 - 401
Target Start/End: Original strand, 9451388 - 9451760
Alignment:
| Q |
14 |
aacctgtggagtctgccaatgcatgtatctaatgcatttaatagcgcatatcttcattgttgtgtttccaacgtgcctgttaatgttctcatgcagaaat |
113 |
Q |
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| T |
9451388 |
aacctatggagtctgccaatgcatatatctaatgcatttaatagggactatcttcattgtcgtgtttccaacatgcctgttaatgttctcatgcagaaat |
9451487 |
T |
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| Q |
114 |
tcatccactctcttccccatgctcatatatccttttctactatccttttcttaattatatatatgggtgttctgttaacaacttgcagt-ctactatcnn |
212 |
Q |
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| T |
9451488 |
taatccactctcttccccatgctcatatttac-------ctatg----------ttatatatatgggtgttctattaacaacttgcagttctactatcct |
9451570 |
T |
|
| Q |
213 |
nnnnn-aattcccaatgtgggttcagattcccaatgtcacttctccattgcaattctactatccttttctcaattctaattccaattcatcaactacttc |
311 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9451571 |
tttcttaattcccaatgtgggttctaattcccaatgtcacttctccattgcaattctactatccttttctcaattctaattccaattcatcaactacttc |
9451670 |
T |
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| Q |
312 |
taaagcagcttatttgtagcattcatgtaacactttctatgcaatatttcttccaaggccttaacggtgttctttaaatttcatattttg |
401 |
Q |
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| T |
9451671 |
taaagcagctcatttgtagcattcatggaacactttctatgcaatatttcttccaaggccttaacggtgttctttaaatttcatattttg |
9451760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 29280231 - 29280311
Alignment:
| Q |
14 |
aacctgtggagtctgccaatgcatgtatctaatgcatttaatagcgcatatcttcattgttgtgtttccaacgtgcctgtt |
94 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
29280231 |
aacctatggagtctgccaatgcatgtatctaatgcatttaataacgcttatcttcattgttgtgtttccaacgtgcctgtt |
29280311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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