View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_high_44 (Length: 387)
Name: NF2071_high_44
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_high_44 |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 17 - 377
Target Start/End: Complemental strand, 8939759 - 8939399
Alignment:
| Q |
17 |
agtaaatgttttccttttatttatgtgaaaagtttcttatacaccaacttcttatactttgtggtgaatatcatttactgtctataggcatctaaatgtt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8939759 |
agtaaatgttttccttttatttatgtgaaaagtttcttatacaccaacttcttatactttgtggtgaatatcatttactgtctataggcatctaaatgtt |
8939660 |
T |
|
| Q |
117 |
cacaaatgtatagtataactgtccaataatatgtataatgaggtaaaaatgacaatacttgcgtttgattaccgtattttgcagggttttaaactaactg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
8939659 |
cacaaatgtatagtataactgtccaataatatgtataatgaggtaaaaatgacaatacttgcttttgattaccgtattttgcagggttttgaactaactg |
8939560 |
T |
|
| Q |
217 |
cgataatgaagtgtaaatatcaaggtagacaagcttagcttctggaaatttattttcaaaggcatccatttgagatactaatttggagttgaagagtctt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
8939559 |
cgataatgaagtgtaaatatcaaggtagacaagcttagcttctggaaatttattttcaaaggcatccattttagatactaatttggagttgaagagtctt |
8939460 |
T |
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| Q |
317 |
gctgcttggttttcaaaatctgaacatcctctttcaatgcctcctccaattgttctctgtg |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8939459 |
gctgcttggttttcaaaatctgaacatcctctttcaatgcctcctccaattgttctctgtg |
8939399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 228 - 377
Target Start/End: Complemental strand, 8947081 - 8946932
Alignment:
| Q |
228 |
tgtaaatatcaaggtagacaagcttagcttctggaaatttattttcaaaggcatccatttgagatactaatttggagttgaagagtcttgctgcttggtt |
327 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||| |||| ||| |
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| T |
8947081 |
tgtaaatatcaaggtagacaagcttagcctctggaaatttattttcaaaggcatccatttgagatactagtttggagttgaagactattgcagcttcgtt |
8946982 |
T |
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| Q |
328 |
ttcaaaatctgaacatcctctttcaatgcctcctccaattgttctctgtg |
377 |
Q |
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||| ||| ||||||| ||| | || |||||||||||||||||||||| |
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| T |
8946981 |
ttctaaacctgaacagtgtctatacattcctcctccaattgttctctgtg |
8946932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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