View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_high_45 (Length: 382)
Name: NF2071_high_45
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF2071_high_45 |
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[»] scaffold0031 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 51047808 - 51047899
Alignment:
Q |
1 |
tgtgtgggagaggagagatcaggatgacagggtcggttagcaatggttatggaaggagataag-aactaagaaagggaaagatgttcgcttc |
91 |
Q |
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T |
51047808 |
tgtgtgggagaggagagatcaggatggcagggtcggttagcaatggttatggaaggagataagaaactaagaaagggaaagatgttcgcttc |
51047899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 152 - 253
Target Start/End: Original strand, 51047960 - 51048063
Alignment:
Q |
152 |
ctaactattttgtaccaaaaaacttaatttaattatttaagctattcaacattt--nnnnnnnnncaaatcaaatctagaattaatcatttttgtactca |
249 |
Q |
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T |
51047960 |
ctaactattttgtacaaaaaaacttaatttaattatttaagctattcaacatttaaaaaaaaaaacaaatcaaatctagaattaatcatttttgtactca |
51048059 |
T |
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Q |
250 |
agga |
253 |
Q |
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|||| |
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T |
51048060 |
agga |
51048063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 351
Target Start/End: Original strand, 51048129 - 51048161
Alignment:
Q |
319 |
accaaacaatccatcaaatctaccatatttctc |
351 |
Q |
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T |
51048129 |
accaaacaatccatcaaatataccatatttctc |
51048161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 1775985 - 1775894
Alignment:
Q |
1 |
tgtgtgggagaggagagatcaggatgacagggtcggttagcaatggttatggaaggagataag-aactaagaaagggaaagatgttcgcttc |
91 |
Q |
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T |
1775985 |
tgtgtgggagaggagagatcaggatggcagggtcggttagcaatggttatggaagtagataagaaactaagaaagggaaagatgttcgcttc |
1775894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 242
Target Start/End: Complemental strand, 1775829 - 1775741
Alignment:
Q |
152 |
ctaactattttgtaccaaaaaa-cttaatttaattatttaagctattcaacatttnnnnnnnnncaaatcaaatctagaattaatcattttt |
242 |
Q |
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T |
1775829 |
ctaactattttgaaccaaaaaaacttaatttaattatttaagctattcaacatttaaaaaaa---aaatcaaatctagaattaatcattttt |
1775741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 351
Target Start/End: Original strand, 38376466 - 38376498
Alignment:
Q |
319 |
accaaacaatccatcaaatctaccatatttctc |
351 |
Q |
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T |
38376466 |
accaaacaatccatcaaatctaccctatttctc |
38376498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 319 - 356
Target Start/End: Original strand, 24088053 - 24088090
Alignment:
Q |
319 |
accaaacaatccatcaaatctaccatatttctctcttc |
356 |
Q |
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T |
24088053 |
accaaacaatccatcaaatctactatatttctctcttc |
24088090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 358
Target Start/End: Complemental strand, 44430121 - 44430082
Alignment:
Q |
319 |
accaaacaatccatcaaatctaccatatttctctcttctc |
358 |
Q |
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T |
44430121 |
accaaacaatacatcaaatctactatatttctctcttctc |
44430082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 351
Target Start/End: Complemental strand, 46290529 - 46290497
Alignment:
Q |
319 |
accaaacaatccatcaaatctaccatatttctc |
351 |
Q |
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T |
46290529 |
accaaacaatccatcaaatctaccatatttctc |
46290497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 105805 - 105759
Alignment:
Q |
152 |
ctaactattttgtaccaaaaaa-cttaatttaattatttaagctatt |
197 |
Q |
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|||| ||||||||| ||||||| |||||||||||||||||||||||| |
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T |
105805 |
ctaattattttgtatcaaaaaaacttaatttaattatttaagctatt |
105759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 106638 - 106556
Alignment:
Q |
1 |
tgtgtgggagaggagagatcaggatgacagggtcggttagcaatggttatggaaggag---ataag-aactaagaaagggaaa |
79 |
Q |
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T |
106638 |
tgtgtgggagaagagagattaagatgggtgggttggttaacaatggttatggaaggagattataagaaactaagaaagggaaa |
106556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 355
Target Start/End: Complemental strand, 13761000 - 13760964
Alignment:
Q |
319 |
accaaacaatccatcaaatctaccatatttctctctt |
355 |
Q |
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||||||||||||||||||||||| |||||||||||| |
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T |
13761000 |
accaaacaatccatcaaatctactctatttctctctt |
13760964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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