View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_high_53 (Length: 353)
Name: NF2071_high_53
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_high_53 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 336
Target Start/End: Original strand, 19587218 - 19587535
Alignment:
| Q |
14 |
atatttatgtgaagctggaactcttttgcaatttggactttggagtattaattagcaagagaattaatcttgagtaactttgtaggttttcttttnnnnn |
113 |
Q |
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| T |
19587218 |
atatttatgtgaagctggaactcttttgcaatttggactttggagtattacttagcaagagaattaatcttgagtaactttgtaggttttcttttataat |
19587317 |
T |
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| Q |
114 |
nnnnnnnnnnnngcatttctggttcaaattagggtgatacttgaaaccttatttttctctatttccttttttgggttaagtgatatatgcttctaatgac |
213 |
Q |
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|| ||| ||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||| |
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| T |
19587318 |
aataataataatgcttttttggttcaaattagggtgatacttgaaaccttatttttgtctact-ccttttttgggttaagtgatatatgcttctaatgac |
19587416 |
T |
|
| Q |
214 |
catggtatggagacatatgcttccaattatctgttcattagaagtgttatgttgattttaataaaatgcaccattaattctagattcatatatgcttctt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
19587417 |
catggtatggagacatatgcttccaattatctgttcattagaagggctatgttgattttaataaaatgcacc----attctagatttatatatgcttctt |
19587512 |
T |
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| Q |
314 |
catattaattgtatgcttctagt |
336 |
Q |
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||||||||||||||||||||||| |
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| T |
19587513 |
catattaattgtatgcttctagt |
19587535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 181 - 336
Target Start/End: Complemental strand, 19582088 - 19581933
Alignment:
| Q |
181 |
tttttgggttaagtgatatatgcttctaatgaccatggtatggagacatatgcttccaattatctgttcattagaagtgttatgttgattttaataaaat |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
19582088 |
tttttgggttaagtgatatatgcttctaatgaccatggtatggagacatatgcttccaattatctgttcattagaagggttatgttgattttaataaaat |
19581989 |
T |
|
| Q |
281 |
gcaccattaattctagattcata----tatgcttcttcatattaattgtatgcttctagt |
336 |
Q |
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||||| |||||||||| ||| |||| |||||||||||||||||||||||||||| |
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| T |
19581988 |
gcacc----attctagattgatatatgtatgtttcttcatattaattgtatgcttctagt |
19581933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 181 - 336
Target Start/End: Original strand, 19591497 - 19591652
Alignment:
| Q |
181 |
tttttgggttaagtgatatatgcttctaatgaccatggtatggagacatatgcttccaattatctgttcattagaagtgttatgttgattttaataaaat |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
19591497 |
tttttgggttaagtgatatatgcttctaatgaccatggtatggagacatatgcttccaattatctgttcattagaagggttatgttgattttaataaaat |
19591596 |
T |
|
| Q |
281 |
gcaccattaattctagattcata----tatgcttcttcatattaattgtatgcttctagt |
336 |
Q |
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||||| |||||||||| ||| |||| |||||||||||||||||||||||||||| |
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|
| T |
19591597 |
gcacc----attctagattgatatatgtatgtttcttcatattaattgtatgcttctagt |
19591652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 169
Target Start/End: Complemental strand, 19582127 - 19582084
Alignment:
| Q |
126 |
gcatttctggttcaaattagggtgatacttgaaaccttattttt |
169 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
19582127 |
gcatttctggttcaaattagggttatacttgaaaccttattttt |
19582084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 169
Target Start/End: Original strand, 19591458 - 19591501
Alignment:
| Q |
126 |
gcatttctggttcaaattagggtgatacttgaaaccttattttt |
169 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
19591458 |
gcatttctggttcaaattagggttatacttgaaaccttattttt |
19591501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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