View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_high_54 (Length: 349)
Name: NF2071_high_54
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_high_54 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 9 - 286
Target Start/End: Original strand, 30343301 - 30343578
Alignment:
| Q |
9 |
ttatactactaaggatcatgtttacaagattcataaaagtttacaagtcaagtggatacccaaggttacaaccattcaggaacctaaagatctnnnnnnn |
108 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
30343301 |
ttattctactaaggatcatgtttacaagattcatagaagtttacaagtcaagtggatacccaaggttacaaccattcgggaacttaaagatctaaaaaaa |
30343400 |
T |
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| Q |
109 |
ttgggattggagtccctaattagcaacctgatgagtcacgttttggagctgaatcatgatgaggctaaacctaaagccatgtctataacactcagatcca |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30343401 |
ttgggattggagtccctaattagcaacctgatgagtcacgtgttaaagctgaatcatgatgaggctaaacctaaagccatgtctataacactcagatcca |
30343500 |
T |
|
| Q |
209 |
atggcaaaacggtgaaagctctgcaagctgaagatgaagctccagaggaagctgatgaagatgttgagctctctgatg |
286 |
Q |
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| T |
30343501 |
atggcaaaacggtgaaagctctgcaagctgaagatgaagctccagaggaagctgatgaagatgttgagctctctgatg |
30343578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 229 - 337
Target Start/End: Original strand, 30347428 - 30347536
Alignment:
| Q |
229 |
ctgcaagctgaagatgaagctccagaggaagctgatgaagatgttgagctctctgatgatgataacttgctttcctcactagaaaagttaaacaactatg |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
30347428 |
ctgcaagctgaagatgaagctccagaggaagctgatgaagatgttgagctctctgatgatgataactggctttcctcactagaaaagttaaacaactatg |
30347527 |
T |
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| Q |
329 |
catggattt |
337 |
Q |
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| T |
30347528 |
catggattt |
30347536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 291
Target Start/End: Original strand, 28560414 - 28560689
Alignment:
| Q |
17 |
ctaaggatcatgtttacaagattcataaaagtttacaagtcaagtggatacccaaggttacaaccattcaggaacctaaagatctnnnnnnnttgggatt |
116 |
Q |
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|||||||||||||| ||||||||| | |||||||| ||||||||||| |||||||||||| | || || ||| ||||| || | ||||| | |
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| T |
28560414 |
ctaaggatcatgttaacaagattctcataagtttactagtcaagtggaggcccaaggttacatctatccaagaagctaaaaatatgaacaaactgggact |
28560513 |
T |
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| Q |
117 |
ggagtccctaattagcaacctgatgagtcacgttttggagctgaatcatgatgaggctaaacctaaagccatgtctataacactcagatccaat-ggcaa |
215 |
Q |
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|||||||| ||||||| || | ||||||| | || ||| ||||||||||||| | ||||||||||| || |||||||||||||| |||||| ||||| |
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| T |
28560514 |
tgagtcccttattagcagcccggtgagtcatgagttagagttgaatcatgatgatgataaacctaaagtcaagtctataacactcaaatccaaaaggcaa |
28560613 |
T |
|
| Q |
216 |
aacggtgaaagctctgcaagctgaagatgaagctccagaggaagctgatgaagatgttgagctctctgatgatgat |
291 |
Q |
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| T |
28560614 |
aatggtgaaagctctgcaggctaaagatgaagctctataggaagctgatgaagatgttgaggtatctggtgatgat |
28560689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 160 - 276
Target Start/End: Original strand, 23212970 - 23213087
Alignment:
| Q |
160 |
aatcatgatgaggctaaacctaaagccatgtctataacactcagatccaatggcaaaac-ggtgaaagctctgcaagctgaagatgaagctccagaggaa |
258 |
Q |
| |
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|||||||||||||||||||||||| ||| |||||||| |||| |||||| ||||||| ||| |||| |||||| |||||||||||||||||| ||||| |
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| T |
23212970 |
aatcatgatgaggctaaacctaaatccaagtctataatgctcaaatccaaaggcaaaaatggtcaaaggtctgcaggctgaagatgaagctccaaaggaa |
23213069 |
T |
|
| Q |
259 |
gctgatgaagatgttgag |
276 |
Q |
| |
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||| |||||||||||||| |
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| T |
23213070 |
gctaatgaagatgttgag |
23213087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 23212841 - 23212926
Alignment:
| Q |
16 |
actaaggatcatgtttacaagattcataaaagtttacaagtcaagtggatacccaaggttacaaccattcaggaacctaaagatct |
101 |
Q |
| |
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||||||||||||||| ||||||||| ||||||||||| | |||||||| || ||| |||| |||||||||||| ||| |||||| |
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| T |
23212841 |
actaaggatcatgttaacaagattcttaaaagtttaccggccaagtggagacgtaagcttactaccattcaggaagctacagatct |
23212926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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