View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_high_55 (Length: 348)
Name: NF2071_high_55
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_high_55 |
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Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 19 - 339
Target Start/End: Original strand, 30143519 - 30143839
Alignment:
| Q |
19 |
caagatgcaatgtcctacaagttgtgtgagttctggtggcatgcatgcggatcttgcacatatttgtttcgagtgtccttttactatatagacttggcgt |
118 |
Q |
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| T |
30143519 |
caagatgcaatgtcctacaagttgtgtgagttctggtggcatgcatgtggatcttgcacatatttaattcgagtgtccttttactatatagacttggcgt |
30143618 |
T |
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| Q |
119 |
acgactagtctctggaatgcagattttatgaatcacaatattgaaggaagtaaggtccttaaaacgcatgccactgtggtttttatgaattgacaatttg |
218 |
Q |
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| T |
30143619 |
acgactagtctctggaatgcggattttatgaacgacaatattgaaggaagtaaggtccttaaaacgcatgccactatggtttttatgaattgacaatttg |
30143718 |
T |
|
| Q |
219 |
ttgatgttatacattaataaatgggtaattctaatatttatcaaatgtgtgaaaatatgagataatgtggataagtgattaaaaaataggcaataagcaa |
318 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
30143719 |
ttgatgttatacattaataaatggctaattctaatatttatcaaatgtgtgaaaatatgagataatgtggataagtgattaaaaaatagacaataagcaa |
30143818 |
T |
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| Q |
319 |
gttgtatttacatgatgatgt |
339 |
Q |
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| T |
30143819 |
gttgtatttacatgatgatgt |
30143839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 26131070 - 26131147
Alignment:
| Q |
24 |
tgcaatgtcctacaagttgtgtgagttctggtggcatgcatgcggatcttgcacatatttgtttcgagtgtcctttta |
101 |
Q |
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| T |
26131070 |
tgcaatgtcccacaagttgtgtgagttgtggtggcctgcatgaggaccttgtacatatttgttttgagtgtcctttta |
26131147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 43218948 - 43218869
Alignment:
| Q |
24 |
tgcaatgtcctacaagttgtgtgagttctggtggcatgcatgcggatcttgcacatatttgtttcgagtgtccttttact |
103 |
Q |
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| T |
43218948 |
tgcaatgtcccacaagttgtgtgagttgttgttgcctgcatgaggaccttgcacatatttgttttgagtgtccttttact |
43218869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 16056543 - 16056604
Alignment:
| Q |
154 |
caatattgaaggaagtaaggtccttaaaacgcatgccactgtggtttttatgaattgacaat |
215 |
Q |
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| T |
16056543 |
caatattgaagaaagtaaggtccttaaaacccgtgccaccgtcatttttatgaatcgacaat |
16056604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 7643253 - 7643172
Alignment:
| Q |
24 |
tgcaatgtcctacaagttgtgtgagttctggtggcatgcatgcggatcttgcacatatttgtttcgagtgtccttttactat |
105 |
Q |
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|||||||||| | || ||||||||||| |||||| ||||| | | ||||| ||||||||||||||||||| ||||||||| |
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| T |
7643253 |
tgcaatgtcccataaattgtgtgagttgtggtggtctgcataagaagcttgctcatatttgtttcgagtgtcattttactat |
7643172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 20250699 - 20250750
Alignment:
| Q |
52 |
tggtggcatgcatgcggatcttgcacatatttgtttcgagtgtccttttact |
103 |
Q |
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||||||| | |||| ||| ||||||||||||||||| ||||||||||||||| |
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| T |
20250699 |
tggtggcctacatgaggaccttgcacatatttgttttgagtgtccttttact |
20250750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 336
Target Start/End: Original strand, 27456018 - 27456106
Alignment:
| Q |
245 |
aattctaatatttatcaaatgtgtgaaaatatgagataatgtggataagtgattaaaaaataggcaataagcaagttgtatttacatgatga |
336 |
Q |
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||||| ||||| ||||||||||| |||||||||||| ||||||||||| ||| | ||||| |||||||||| | |||||||||||||| |
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| T |
27456018 |
aattcaaatatgtatcaaatgtg--aaaatatgagatgatgtggataagcgatcggacaatagtcaataagcaaagt-tatttacatgatga |
27456106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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