View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_high_58 (Length: 337)
Name: NF2071_high_58
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_high_58 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 53489109 - 53489434
Alignment:
| Q |
1 |
ccactctcttttt-atatttaaattattatctcaagatttgtgaaatttataaaaacggtaaaataaataagctctatcttaatatttgatgtgctagtt |
99 |
Q |
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||||||||||||| || ||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||| ||||||||| || |
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| T |
53489109 |
ccactctcttttttatgtttaaattattatctcaagatttttaaaatttataaaaacggtccaataaataagctctatcttaatatt-gatgtgctattt |
53489207 |
T |
|
| Q |
100 |
gattccattatctaaacaaagaatttgaaaataaacattttgaaattaagaaacttacacaacatgtgcaggattccagagaaaagaataggtatgaaaa |
199 |
Q |
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|||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53489208 |
gattccattatccaaacaaagaatttgaaa-taaacattttgaaatttagaaacttacacaacatgtgcaggattccagagaaaagaataggtatgaaaa |
53489306 |
T |
|
| Q |
200 |
cttgtagttggatcaaaccataaatagaattgttgctctctgtctcctttgccttgggtgtactcattggtatgaactatgtaaggatcaccactcaaat |
299 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
53489307 |
cttgtagttgggtcaaaccataaatagaattgttgctctctgtcccctttgccttgggtgtacacatttgtatgaactatgtaaggatcaccactcaaat |
53489406 |
T |
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| Q |
300 |
ttcccaagaattcaaagtctattccatc |
327 |
Q |
| |
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||||||||||||||||||||||| |||| |
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| T |
53489407 |
ttcccaagaattcaaagtctatttcatc |
53489434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 229 - 327
Target Start/End: Complemental strand, 53492732 - 53492634
Alignment:
| Q |
229 |
ttgttgctctctgtctcctttgccttgggtgtactcattggtatgaactatgtaaggatcaccactcaaatttcccaagaattcaaagtctattccatc |
327 |
Q |
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| T |
53492732 |
ttgttgctctctgtcacctttgccttggctaaacacattggtatgaaggatgtaaggatcaccactcaaatttcccaagaattcaaagtcaatttcatc |
53492634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 152 - 318
Target Start/End: Complemental strand, 53499114 - 53498948
Alignment:
| Q |
152 |
acttacacaacatgtgcaggattccagagaaaagaataggtatgaaaacttgtagttggatcaaaccataaatagaattgttgctctctgtctcctttgc |
251 |
Q |
| |
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|||||||||| | || ||||||||| |||| || || || |||||| || |||||| |||||||| | || |||||||||||||||| ||||||| |
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| T |
53499114 |
acttacacaatacgttgaggattccatagaattgagtatgtgtgaaaatctgcagttgggtcaaaccaaaggtaaaattgttgctctctgttacctttgc |
53499015 |
T |
|
| Q |
252 |
cttgggtgtactcattggtatgaactatgtaaggatcaccactcaaatttcccaagaattcaaagtc |
318 |
Q |
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| T |
53499014 |
cttggctaaacacattggtgtgaaggatgtaaggatcaccactcaaatttcccaagaattcaaagtc |
53498948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 205 - 327
Target Start/End: Complemental strand, 37188696 - 37188574
Alignment:
| Q |
205 |
agttggatcaaaccataaatagaattgttgctctctgtctcctttgccttgggtgtactcattggtatgaactatgtaaggatcaccactcaaatttccc |
304 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||| ||||| |||||| | || ||||||| |||| ||||| || ||||||||||| |||||| |
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| T |
37188696 |
agttgggtcaaaccataggtagaattgttgctctctgttaccttttccttggctaaacacattggtgtgaagaatgtatgggtcaccactcaagtttccc |
37188597 |
T |
|
| Q |
305 |
aagaattcaaagtctattccatc |
327 |
Q |
| |
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|||||||||||||| ||| |||| |
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| T |
37188596 |
aagaattcaaagtcaatttcatc |
37188574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 327
Target Start/End: Complemental strand, 16942245 - 16942130
Alignment:
| Q |
212 |
tcaaaccataaatagaattgttgctctctgtctcctttgccttgggtgtactcattggtatgaactatgtaaggatcaccactcaaatttcccaagaatt |
311 |
Q |
| |
|
|||||||| |||||||||||||||||||| | ||||| ||||| ||| | | || ||||||| || ||||||||||||||||| || || | |||| |
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| T |
16942245 |
tcaaaccacaaatagaattgttgctctctattccctttcccttgtgtgaatacgtttgtatgaagaatataaggatcaccactcaagttaccaagaaatt |
16942146 |
T |
|
| Q |
312 |
caaagtctattccatc |
327 |
Q |
| |
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||||||||||| |||| |
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|
| T |
16942145 |
caaagtctatttcatc |
16942130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 327
Target Start/End: Complemental strand, 17012910 - 17012795
Alignment:
| Q |
212 |
tcaaaccataaatagaattgttgctctctgtctcctttgccttgggtgtactcattggtatgaactatgtaaggatcaccactcaaatttcccaagaatt |
311 |
Q |
| |
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|||||||| |||||||||||||||||||| | ||||| ||||| ||| | | || ||||||| || ||||||||||||||||| || || | |||| |
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| T |
17012910 |
tcaaaccacaaatagaattgttgctctctattccctttcccttgtgtgaatacgtttgtatgaagaatataaggatcaccactcaagttaccaagaaatt |
17012811 |
T |
|
| Q |
312 |
caaagtctattccatc |
327 |
Q |
| |
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||||||||||| |||| |
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|
| T |
17012810 |
caaagtctatttcatc |
17012795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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