View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2071_high_63 (Length: 309)
Name: NF2071_high_63
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_high_63 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 12 - 294
Target Start/End: Complemental strand, 18419866 - 18419584
Alignment:
| Q |
12 |
atgaatgccttggagtttagtagtacatggaagcttgttccacttccccatggaaaatctaaagttggttgtcgatgggtctttgctattaaagtaggcc |
111 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
18419866 |
atgaataccttggagtttagtagtacatggaagcttgttccacttccccatggaaaatttaaagttggttgtcaatgggtctttgctattaaagtaggcc |
18419767 |
T |
|
| Q |
112 |
ctgatggacaagtggatcgtttgaaagcctgattagtagcaaaaggatacactcaaatttatgggtttaactacagtgatactttttctccagttgcaaa |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
18419766 |
ctgatggacaagtggatcgtttgaaagcctgattagtagcaaaaggatacactcaaatttatgggcttgactacagtgatactttttctccagttgcaaa |
18419667 |
T |
|
| Q |
212 |
aatggcttttgttcgtcttttcttgtcaatggttgctatgaaccattggcctttgtatcaacttgatattaaaaatgttttct |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18419666 |
aatggcttttgttcgtcttttcttgtcaatggttgctatgaaccattggcctttgtatcaacttgatattaaaaatgttttct |
18419584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 12 - 288
Target Start/End: Original strand, 52962964 - 52963239
Alignment:
| Q |
12 |
atgaatgccttggagtttagtagtacatggaagcttgttccacttccccatggaaaatctaaagttggttgtcgatgggtctttgctattaaagtaggcc |
111 |
Q |
| |
|
|||||||| ||||||| ||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
52962964 |
atgaatgcattggagtctagtagtgcatggaagcttgttccacttcctcatggaaaatctgaagttggttgtcgatgggtctttgctat-aaagtaggcc |
52963062 |
T |
|
| Q |
112 |
ctgatggacaagtggatcgtttgaaagcctgattagtagcaaaaggatacactcaaatttatgggtttaactacagtgatactttttctccagttgcaaa |
211 |
Q |
| |
|
|||||||||| || || |||||||||| |||||||||||||| ||||||||||||||||||| || |||||| ||| || |||||||||||||| || |
|
|
| T |
52963063 |
ctgatggacaggtagactgtttgaaagctcgattagtagcaaaaagatacactcaaatttatggccttgactacattgacaccttttctccagttgctaa |
52963162 |
T |
|
| Q |
212 |
aatggcttttgttcgtcttttcttgtcaatggttgctatgaaccattggcctttgtatcaacttgatattaaaaatg |
288 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| | |||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
52963163 |
aatggcctttgttcgtcttttcttgtcaatggttgttgtgaaacattggcctttgtatcaacttaatattaaaaatg |
52963239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 221 - 288
Target Start/End: Complemental strand, 19937948 - 19937881
Alignment:
| Q |
221 |
tgttcgtcttttcttgtcaatggttgctatgaaccattggcctttgtatcaacttgatattaaaaatg |
288 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||| ||| |||||||||||||||||| ||||||||||| |
|
|
| T |
19937948 |
tgttcgtcttttcttgtctatgtttgctatgaaacatcggcctttgtatcaacttgctattaaaaatg |
19937881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 12 - 294
Target Start/End: Original strand, 33833614 - 33833896
Alignment:
| Q |
12 |
atgaatgccttggagtttagtagtacatggaagcttgttccacttccccatggaaaatctaaagttggttgtcgatgggtctttgctattaaagtaggcc |
111 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33833614 |
atgaatgccttggagtctagtagtacatggaagcttgttccacttccccatggaaaatctaaagttggttgtcgatgggtctttgctattaaagtaggcc |
33833713 |
T |
|
| Q |
112 |
ctgatggacaagtggatcgtttgaaagcctgattagtagcaaaaggatacactcaaatttatgggtttaactacagtgatactttttctccagttgcaaa |
211 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
33833714 |
ctgatggacaagtggatcgtttgaaagcccgattagtagcaaaaggatacactcaaatttatgggcttgactacagtgatactttttctccagttgcaaa |
33833813 |
T |
|
| Q |
212 |
aatggcttttgttcgtcttttcttgtcaatggttgctatgaaccattggcctttgtatcaacttgatattaaaaatgttttct |
294 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33833814 |
aatggcttctgttcgtcttttcttgtcaatggctgctatgaaccattggcctttgtatcaacttgatattaaaaatgctttct |
33833896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 12 - 294
Target Start/End: Complemental strand, 37918145 - 37917863
Alignment:
| Q |
12 |
atgaatgccttggagtttagtagtacatggaagcttgttccacttccccatggaaaatctaaagttggttgtcgatgggtctttgctattaaagtaggcc |
111 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37918145 |
atgaatgccttggagtctagtagtacatggaagcttgttccacttacccatggaaaatctaaagttggttgtcgatgggtctttgctattaaagtaggcc |
37918046 |
T |
|
| Q |
112 |
ctgatggacaagtggatcgtttgaaagcctgattagtagcaaaaggatacactcaaatttatgggtttaactacagtgatactttttctccagttgcaaa |
211 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
37918045 |
ctgatggacaagtggatcatttgaaagcccgattagtagcaaaaggatacactcaaatttatgggcttgactacagtgatactttttctccagttgcaaa |
37917946 |
T |
|
| Q |
212 |
aatggcttttgttcgtcttttcttgtcaatggttgctatgaaccattggcctttgtatcaacttgatattaaaaatgttttct |
294 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
37917945 |
aatggcttctgttcgtcttttcttgtcaatggctgctatgaaccattggcctatgtatcaacttgatattaaaaatgctttct |
37917863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 12 - 173
Target Start/End: Original strand, 36999679 - 36999840
Alignment:
| Q |
12 |
atgaatgccttggagtttagtagtacatggaagcttgttccacttccccatggaaaatctaaagttggttgtcgatgggtctttgctattaaagtaggcc |
111 |
Q |
| |
|
|||||| | ||||||| ||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36999679 |
atgaatacattggagtctagtagtacatggaagcttgttccaattccacatgggaaatctaaagttggttgtcgatgggtctttgctattaaagtaggcc |
36999778 |
T |
|
| Q |
112 |
ctgatggacaagtggatcgtttgaaagcctgattagtagcaaaaggatacactcaaatttat |
173 |
Q |
| |
|
|||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
36999779 |
ctgatggacatgtggatcgtttgatagcccgattagtagcaaaaggatacactcaaatttat |
36999840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 202 - 286
Target Start/End: Original strand, 36999843 - 36999927
Alignment:
| Q |
202 |
cagttgcaaaaatggcttttgttcgtcttttcttgtcaatggttgctatgaaccattggcctttgtatcaacttgatattaaaaa |
286 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36999843 |
cagttgcaaaaatggcatttgttcgtgttttcttatcaatggcttctatgaaccattggcctttgtatcaacttgatattaaaaa |
36999927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 10429 times since January 2019
Visitors: 7978