View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_high_64 (Length: 306)
Name: NF2071_high_64
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_high_64 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 53 - 290
Target Start/End: Complemental strand, 32664373 - 32664136
Alignment:
| Q |
53 |
aatagaagcaaatttaccttgatgattatgatatttgaccactttttctcacgaataatcaatgtatcgttggcatattgtaagtgtgtgaacatgtctt |
152 |
Q |
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| T |
32664373 |
aatagaagcaaatttaccttgatgattctgatatttgaccactttttctcacgaataatcaatgtatcgttggcatattgtaagtttgtgaacatgtctt |
32664274 |
T |
|
| Q |
153 |
cctccatgtcaaatctgtatactgtcaattttccctcctccattgccctcctcatcaacatattgaagctttccgccgctattagataaaggaatgacga |
252 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32664273 |
cctccatgtcaaatctgtatactgtcaattttccctcctccattgccctcctcatcaacatattgaagctttccgccactattagataaaggaatgacga |
32664174 |
T |
|
| Q |
253 |
caacgtacctccttgctagtataaatgatagagtcatt |
290 |
Q |
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| T |
32664173 |
caacgcacctccttgctagtataaatggtagagtcatt |
32664136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 32668607 - 32668553
Alignment:
| Q |
1 |
tccgactaataaacttttatgaaagttcactcacagacccgatattacctcaaat |
55 |
Q |
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| T |
32668607 |
tccgactaataaacttttatgaaagttcactcatagacccgatattacctcaaat |
32668553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 27119878 - 27119947
Alignment:
| Q |
69 |
ccttgatgattatgatatttgaccactttttctcacgaataatcaatgtatcgttggcatattgtaagtg |
138 |
Q |
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| T |
27119878 |
ccttaatgattatgatattctaccactttttttcaccaataatcaatgtgtcgtctacatattgtaagtg |
27119947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 254
Target Start/End: Original strand, 23703363 - 23703605
Alignment:
| Q |
12 |
aacttttatgaaagttcactcacagacccgatattacctcaaatagaagcaaatttaccttgatgattatgatatttgaccactttttctcacgaataat |
111 |
Q |
| |
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|||||||||||||||| ||| ||||| | ||||| ||||| ||||| |||||| |||| | ||| ||||||| |||||||||| |||| |||||| |
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| T |
23703363 |
aacttttatgaaagttgacttttagaccaaacattacttcaaaaagaagtaaatttgcctttttaattttgatattcaaccactttttttcactaataat |
23703462 |
T |
|
| Q |
112 |
caatgtatcgttggcatattgtaagtgtgtgaacatgtcttcctccatgtcaaatctgtatactgtcaattttccctcctccattgccctcctcatcaac |
211 |
Q |
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| T |
23703463 |
caatgtatcgtcatcatattgtaaatgtgttagccggtcttcccccttgtcaaatatgtattctgtgaattttccctcctccactgccatcctcatcaac |
23703562 |
T |
|
| Q |
212 |
atattgaagctttccgccgctattagataaaggaatgacgaca |
254 |
Q |
| |
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| T |
23703563 |
atattaaagccttctgctacaattaaataaaggaacgacgaca |
23703605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 83 - 255
Target Start/End: Complemental strand, 39294113 - 39293940
Alignment:
| Q |
83 |
atatttgaccactttttctcacgaataatcaatgtatcgttggcatattgtaagtgtgtgaacatgtcttcctccatgtcaaatctgtatactgtcaatt |
182 |
Q |
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|
||||| |||||||||||||||| ||||||||| |||| | ||| |||| ||| || ||||| | |||||| ||||||||||| ||||| |||| |||| |
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| T |
39294113 |
atattcgaccactttttctcaccaataatcaagttatcatcggcgtattctaaatgagtgaaaagatcttcccccatgtcaaatttgtatcctgtgaatt |
39294014 |
T |
|
| Q |
183 |
ttccct-cctccattgccctcctcatcaacatattgaagctttccgccgctattagataaaggaatgacgacaa |
255 |
Q |
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||| |||||| | | ||||||||||||||||||||| |||||| ||||||||| ||||||| |||||||| |
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| T |
39294013 |
gcccccacctccactactctcctcatcaacatattgaagtcttccgctgctattagaaaaaggaacgacgacaa |
39293940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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