View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_high_66 (Length: 300)
Name: NF2071_high_66
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_high_66 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 15 - 287
Target Start/End: Complemental strand, 2249140 - 2248869
Alignment:
| Q |
15 |
aatgacagacgggaagacggagccgtttaccaccacgcacgacaatgattagattttctacttttatgttgttttctccatgtcatttgagtcctaattc |
114 |
Q |
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| T |
2249140 |
aatgacagatgggaagacggagtagtttaccaccacgcacgacaatgattagattttctacttttatgttgttttctccatgtcatttgagtcctaattt |
2249041 |
T |
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| Q |
115 |
cataattgttgcaaagggtgaaaggagacaacgaagaggaaaggaaggcggttacatatcagtaaatatggtttgatgctcaataaatatctaactttcg |
214 |
Q |
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| T |
2249040 |
cataattgttgcaaagggtgaaaggagaca-cgaagaggaaaggaaggcagttacatatcagtaaatatggtttgatgctcaataaatatctaactttcg |
2248942 |
T |
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| Q |
215 |
tttaacaaaaaaggtggttacgtatcagcaaattaactaagatgaattagaaaatattaatcatgatatatat |
287 |
Q |
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| T |
2248941 |
tttaacgaaaaaggtggttacgtatcagtaaattaactaagatgaattagaaaatattaaccatgatatatat |
2248869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 14138190 - 14138259
Alignment:
| Q |
185 |
gtttgatgctcaataaatatctaactttcgtttaacaaaaaaggtggttacgtatcagcaaattaactaa |
254 |
Q |
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| T |
14138190 |
gtttgttgctcaataaatatctaactttcctctaagggaaaaggtggttacatatcagtaaattaactaa |
14138259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 67 - 190
Target Start/End: Original strand, 9813605 - 9813725
Alignment:
| Q |
67 |
attttctacttttatgttgttttctccatgtcatttgagtcctaattccataattgttgcaaagggtgaaaggagacaacgaagaggaaaggaaggcggt |
166 |
Q |
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| T |
9813605 |
attttctacttttatgctgttttctccatgtcatttgagtcctagttacataattgttgcaaacggtgaaagga---aacaaagagaaaaggaaggcggt |
9813701 |
T |
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| Q |
167 |
tacatatcagtaaatatggtttga |
190 |
Q |
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| T |
9813702 |
tacatatcaataaatatggtttga |
9813725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 75 - 188
Target Start/End: Original strand, 40800941 - 40801054
Alignment:
| Q |
75 |
cttttatgttgttttctccatgtcatttgagtcctaattccataattgttgcaaagggtgaaaggagacaacgaagaggaaaggaaggcggttacatatc |
174 |
Q |
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||||||||||||| | | ||||| ||||||||||| ||||||||||||| |||||||||||||||| || ||||||||||||||||| |||||||||| |
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| T |
40800941 |
cttttatgttgttgtttgcatgtgatttgagtccttattccataattgtcgcaaagggtgaaaggaaacgacgaagaggaaaggaagatggttacatatt |
40801040 |
T |
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| Q |
175 |
agtaaatatggttt |
188 |
Q |
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| T |
40801041 |
agtaaatatggttt |
40801054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 40801081 - 40801136
Alignment:
| Q |
186 |
tttgatgctcaataaatatctaactttcgtttaacaaaaaaggtggttacgtatcag |
242 |
Q |
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| T |
40801081 |
tttgatgctcaataaatatctaac-ttcctttaacataaaaggtggttacgtatcag |
40801136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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