View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_high_68 (Length: 289)
Name: NF2071_high_68
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_high_68 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 20 - 276
Target Start/End: Complemental strand, 26823809 - 26823553
Alignment:
| Q |
20 |
taaagtagcaagtgaaggagttgttatgcaacttgaattcatatggaagaatatcagagaacctttgatagtgccaatgttgagatggacagtgtatttg |
119 |
Q |
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| T |
26823809 |
taaagtagcaagtgaaggagttgttatgcaacttgagttcatatggaagaatatcagagaacctttgatagtgccaatgttgagatggacagtgtatttg |
26823710 |
T |
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| Q |
120 |
tgcctaggtttgtcattgataatgttggttgagaaagtatacgtggcaattgtcatttgttatgtgaagttgtttaaaagaacaccagagaaacgttata |
219 |
Q |
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||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26823709 |
tgcttaggtttgtcattgataatgttggttgagaaagtttacatggcaattgtcatttgttatgtgaagttgtttaaaagaacaccagagaaacgttata |
26823610 |
T |
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| Q |
220 |
aatttgaggctattgaggatgatgctgagttgggaaactccaattatcccatggttc |
276 |
Q |
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| T |
26823609 |
aatttgaggctattgaggatgatgttgagttgggaaactcctattatcccatggttc |
26823553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 20 - 276
Target Start/End: Complemental strand, 26799717 - 26799461
Alignment:
| Q |
20 |
taaagtagcaagtgaaggagttgttatgcaacttgaattcatatggaagaatatcagagaacctttgatagtgccaatgttgagatggacagtgtatttg |
119 |
Q |
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| T |
26799717 |
taaagtagcaagtgaaggagttggtatgcaacttgagttcatatggaagaatatcagagaacctttgatagtgccaatgttgagatggacagtgtatttg |
26799618 |
T |
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| Q |
120 |
tgcctaggtttgtcattgataatgttggttgagaaagtatacgtggcaattgtcatttgttatgtgaagttgtttaaaagaacaccagagaaacgttata |
219 |
Q |
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| T |
26799617 |
tgcttaggtttgtcattgataatgttggttgaaaaagtatacatggcaattgtcatttgttatgtgaagttgtttaagagaacaccagagaagtgttata |
26799518 |
T |
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| Q |
220 |
aatttgaggctattgaggatgatgctgagttgggaaactccaattatcccatggttc |
276 |
Q |
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| T |
26799517 |
aatttaaggctattgaggatgatgttgagttgggaaactctaattatcccatggttc |
26799461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 22 - 265
Target Start/End: Complemental strand, 26786939 - 26786696
Alignment:
| Q |
22 |
aagtagcaagtgaaggagttgttatgcaacttgaattcatatggaagaatatcagagaacctttgatagtgccaatgttgagatggacagtgtatttgtg |
121 |
Q |
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||||||| ||||||||||||| ||||||||||| || || |||| ||| || |||||||||||||| ||||||||| ||||| |||||| | | || |
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| T |
26786939 |
aagtagctagtgaaggagttggtatgcaacttgcgtttatttggaggaaaataagagaacctttgatcgtgccaatgctgagagctgcagtgtttatctg |
26786840 |
T |
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| Q |
122 |
cctaggtttgtcattgataatgttggttgagaaagtatacgtggcaattgtcatttgttatgtgaagttgtttaaaagaacaccagagaaacgttataaa |
221 |
Q |
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|||| | |||||||||| || |||||||||| ||| ||| ||| |||||| ||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
26786839 |
cctaagcatgtcattgatgatattggttgagatagtttacatgggaattgtgatttgtttagtgaagttgtttaaaagaacacctgagaaacgttataaa |
26786740 |
T |
|
| Q |
222 |
tttgaggctattgaggatgatgctgagttgggaaactccaatta |
265 |
Q |
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| ||| ||||| ||||||||| |||||||| |||||| ||||| |
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| T |
26786739 |
tgggagactattaaggatgatgttgagttggaaaactctaatta |
26786696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 120 - 276
Target Start/End: Complemental strand, 26833630 - 26833474
Alignment:
| Q |
120 |
tgcctaggtttgtcattgataatgttggttgagaaagtatacgtggcaattgtcatttgttatgtgaagttgtttaaaagaacaccagagaaacgttata |
219 |
Q |
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|||||||| |||| ||||| ||||||||||||| ||| ||| ||| |||||| |||| |||||||||||||||| |||| ||||||||||||||||| |
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| T |
26833630 |
tgcctaggcatgtcgttgatgatgttggttgagagagtttacatgggaattgtgatttcttatgtgaagttgtttggtagaaaaccagagaaacgttata |
26833531 |
T |
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| Q |
220 |
aatttgaggctattgaggatgatgctgagttgggaaactccaattatcccatggttc |
276 |
Q |
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||| ||| ||||| ||||||||| ||||||||||||||| ||||| || ||||||| |
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| T |
26833530 |
aatgggagactattaaggatgatgttgagttgggaaactctaattaccctatggttc |
26833474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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