View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_high_75 (Length: 257)
Name: NF2071_high_75
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_high_75 |
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Alignment Details
Target: chr8 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 3 - 163
Target Start/End: Original strand, 3676739 - 3676899
Alignment:
| Q |
3 |
acagattttaaatctgagatgtcctgggtttgagctcctctaatatttttgaagagatgtaaatataaatacatttataaatgttcttatctttgactca |
102 |
Q |
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| T |
3676739 |
acagattttaaatttgagatgttctgggttcgagctcctctaatatttttggagggatgtaaatataaatatatttataaatgttcttacctttgactca |
3676838 |
T |
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| Q |
103 |
ctgnnnnnnntatgatatgcatatctcatagaatttgtttcatcttcaacacttggcatcc |
163 |
Q |
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| T |
3676839 |
gtgaaaaaaatatgatatgcatatctcatagaatttgtttcatcttcaacacttggcatcc |
3676899 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 43568585 - 43568545
Alignment:
| Q |
50 |
tttgaagagatgtaaatataaatacatttataaatgttctt |
90 |
Q |
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| T |
43568585 |
tttgaagaaatgtaaaaataaatacatttataaatgttctt |
43568545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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