View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2071_high_84 (Length: 248)

Name: NF2071_high_84
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2071_high_84
NF2071_high_84
[»] chr5 (3 HSPs)
chr5 (77-213)||(35854545-35854681)
chr5 (25-194)||(10521323-10521492)
chr5 (140-213)||(35802504-35802577)
[»] chr4 (6 HSPs)
chr4 (48-189)||(55705908-55706049)
chr4 (81-183)||(54304257-54304359)
chr4 (77-189)||(45876742-45876854)
chr4 (77-183)||(47293489-47293595)
chr4 (83-188)||(45858817-45858922)
chr4 (83-189)||(56208543-56208649)
[»] chr8 (2 HSPs)
chr8 (52-201)||(7972057-7972206)
chr8 (54-183)||(7961689-7961818)
[»] chr2 (1 HSPs)
chr2 (83-183)||(24357488-24357588)


Alignment Details
Target: chr5 (Bit Score: 105; Significance: 1e-52; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 77 - 213
Target Start/End: Complemental strand, 35854681 - 35854545
Alignment:
Q  77 tctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccg 176  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35854681 tctgttttgaggtatattggccttcaattttgctatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccatgagatgctgcgtccttaccg 35854582  T
Q  177 gtccaaagcctcctatgttcaacctttttcgtcttgt 213  Q
    ||||||| ||||| |||| ||||||||||| ||||||    
T  35854581 gtccaaatcctcccatgtgcaacctttttcatcttgt 35854545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 25 - 194
Target Start/End: Complemental strand, 10521492 - 10521323
Alignment:
Q  25 aaagcatgagtagagtaggaccggatcatgagagctccacaataccaacttttctgttttgaggtatattggccttcaattttgctatagcaatcgcaca 124  Q
    |||| ||| |||||| ||||||||||| ||||||||| |||| |  ||| | | |||||||||||||||||||||| |||||||| |||||||| ||||     
T  10521492 aaagtatgcgtagagaaggaccggatcttgagagctcgacaagattaacctgtttgttttgaggtatattggccttgaattttgcgatagcaatagcacg 10521393  T
Q  125 agatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccggtccaaagcctcctatgt 194  Q
     ||||||||||||||||||||||||||||| ||||||| ||||||||| ||| |||||| ||||||||||    
T  10521392 cgatatcccaccaatagcatcaaccaaaccttgagatgctgcgtccttcccgatccaaatcctcctatgt 10521323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 35802504 - 35802577
Alignment:
Q  140 agcatcaaccaaaccatgagatgttgcgtccttaccggtccaaagcctcctatgttcaacctttttcgtcttgt 213  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||| |||| ||||||||||| ||||||    
T  35802504 agcatcaaccaaaccatgagatgctgcgtccttaccggtccaaatcctcccatgtgcaacctttttcatcttgt 35802577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 48 - 189
Target Start/End: Complemental strand, 55706049 - 55705908
Alignment:
Q  48 gatcatgagagctccacaataccaacttttctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaa 147  Q
    |||| |||||||||||||| |  ||| | |||||||||||||||||| || ||||||||||  |||||||| ||||  ||||||||||||||||||||||    
T  55706049 gatcttgagagctccacaacaataacctctctgttttgaggtatattagctttcaattttgtaatagcaatagcacgcgatatcccaccaatagcatcaa 55705950  T
Q  148 ccaaaccatgagatgttgcgtccttaccggtccaaagcctcc 189  Q
    ||||||||||||||| |||||| ||||||||||||| |||||    
T  55705949 ccaaaccatgagatgctgcgtctttaccggtccaaaccctcc 55705908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 81 - 183
Target Start/End: Complemental strand, 54304359 - 54304257
Alignment:
Q  81 ttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccggtcc 180  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||| ||||| ||||||||||||||||||||  ||||||||||||||||||| ||||    
T  54304359 ttttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatgttgcgtccttaccagtcc 54304260  T
Q  181 aaa 183  Q
    |||    
T  54304259 aaa 54304257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 77 - 189
Target Start/End: Original strand, 45876742 - 45876854
Alignment:
Q  77 tctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccg 176  Q
    ||||| |||||||||||| || |||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||| |||| ||| |||||||||    
T  45876742 tctgtcttgaggtatattagctttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaaccatgggatgctgcatccttaccg 45876841  T
Q  177 gtccaaagcctcc 189  Q
    ||||||| |||||    
T  45876842 gtccaaaccctcc 45876854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 77 - 183
Target Start/End: Complemental strand, 47293595 - 47293489
Alignment:
Q  77 tctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccg 176  Q
    |||||||||||||||||||||||||||||||||||||||||| || |  ||||  ||||||||||||||||||||||||||||||  ||||||||||| |    
T  47293595 tctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaaaccatgagatactgcgtccttactg 47293496  T
Q  177 gtccaaa 183  Q
    |||||||    
T  47293495 gtccaaa 47293489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 83 - 188
Target Start/End: Original strand, 45858817 - 45858922
Alignment:
Q  83 ttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccggtccaa 182  Q
    |||||||||||||||||||||||| ||||||||||| ||||  |||| |||||||||||||||||||| ||||||||||  ||| |||||||||||||||    
T  45858817 ttgaggtatattggccttcaatttggctatagcaatagcacgtgatagcccaccaatagcatcaaccagaccatgagatactgcatccttaccggtccaa 45858916  T
Q  183 agcctc 188  Q
    | ||||    
T  45858917 accctc 45858922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 83 - 189
Target Start/End: Original strand, 56208543 - 56208649
Alignment:
Q  83 ttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccggtccaa 182  Q
    ||||||||||   ||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||| |||||  ||| || ||||||||| ||    
T  56208543 ttgaggtataccagccttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaaccaagagatagtgcatctttaccggtctaa 56208642  T
Q  183 agcctcc 189  Q
    | |||||    
T  56208643 accctcc 56208649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 52 - 201
Target Start/End: Original strand, 7972057 - 7972206
Alignment:
Q  52 atgagagctccacaataccaacttttctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaa 151  Q
    |||||||||||||||||  ||| | |||||||||||| | ||||||||||||||||||||||||||| ||||  ||||  ||||  |||||||| |||||    
T  7972057 atgagagctccacaatagtaacatgtctgttttgaggaagattggccttcaattttgctatagcaatagcacgcgatagtccactgatagcatcgaccaa 7972156  T
Q  152 accatgagatgttgcgtccttaccggtccaaagcctcctatgttcaacct 201  Q
    ||||| ||||  ||| || ||||||||||||| |||||| ||| ||||||    
T  7972157 accattagatactgcatctttaccggtccaaatcctcctctgtgcaacct 7972206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 183
Target Start/End: Original strand, 7961689 - 7961818
Alignment:
Q  54 gagagctccacaataccaacttttctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaac 153  Q
    |||| ||||||||||  ||| | | |||||||||| ||||||||||||||||||||||||||||| ||    ||||| |||||||||||||| ||||||     
T  7961689 gagaactccacaatagtaacatgtttgttttgaggaatattggccttcaattttgctatagcaatagcgtgcgatattccaccaatagcatcgaccaaat 7961788  T
Q  154 catgagatgttgcgtccttaccggtccaaa 183  Q
    ||| |||| |||| || ||||| |||||||    
T  7961789 cattagatattgcatctttaccagtccaaa 7961818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 83 - 183
Target Start/End: Complemental strand, 24357588 - 24357488
Alignment:
Q  83 ttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccggtccaa 182  Q
    |||||||||||||||||||||||||||||| ||||| || |  || |  |||||||||||||||||||||||||| |||| ||| || ||||| ||||||    
T  24357588 ttgaggtatattggccttcaattttgctatggcaatagctcgggaaaggccaccaatagcatcaaccaaaccatgtgatgctgcatctttaccagtccaa 24357489  T
Q  183 a 183  Q
    |    
T  24357488 a 24357488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 15905 times since January 2019
Visitors: 3757