View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_high_88 (Length: 243)
Name: NF2071_high_88
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_high_88 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 30343004 - 30343246
Alignment:
| Q |
1 |
tttgattgatgatgaaaagaaagaatacaaaaagcatcacaacgtcataaacaatttggtgaatgctttataattcaaggaattagacaagattgataat |
100 |
Q |
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| T |
30343004 |
tttgattgataatgaaaagaaagaatacaaaaagcatcacaaagtcataaacaatttggtgaatgctttataattcaaggaattagacaagattgctgat |
30343103 |
T |
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| Q |
101 |
aattctactcccaagagtatctttatgctctttgtgctacttatgaaggaaatcagcacataaaagaggtgaaagccaatcttttggtgcatcagtatga |
200 |
Q |
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| T |
30343104 |
aattctactcccaagagtatctttatgctctttgtgctacttatgaaggaaatcagcacatgaaagaggtgaaagccaatcttctagtgcatcagtatga |
30343203 |
T |
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| Q |
201 |
aaccttcaagatgaaggaagatgaagatatttaaaccatgttc |
243 |
Q |
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| T |
30343204 |
aaccttcaagatgaaggaagatgaagatatttaaaccatgttc |
30343246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 28560124 - 28560344
Alignment:
| Q |
11 |
gatgaaaagaaagaatacaaaaagcatcacaacgtcataaacaatttggtgaatgctttataattcaaggaattagacaagattgataataattctactc |
110 |
Q |
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| T |
28560124 |
gatgaaaagaaggaatacaaaaagcatcacaaagcgagaaacatttaggtgaatgttttggaattcaaggaattcaacaagattgttgataaatctactc |
28560223 |
T |
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| Q |
111 |
ccaagagtatcttt-atgctctttgtgctacttatgaaggaaatcagcacataaaagaggtgaaagccaatcttttggtgcatcagtatgaaaccttcaa |
209 |
Q |
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| T |
28560224 |
ctaagagtacgtttgatgctctctatgctacatatgaaggaaattagcaaatcaaggaggcaatggccaatttgctagtgccacggtatgaaaccctgaa |
28560323 |
T |
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| Q |
210 |
gatgaaggaagatgaagatat |
230 |
Q |
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| T |
28560324 |
gataaaggaagatgaagatat |
28560344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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