View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2071_high_89 (Length: 243)
Name: NF2071_high_89
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_high_89 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 149; Significance: 8e-79; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 7605783 - 7606002
Alignment:
| Q |
1 |
caaaattagttaggtgtcattatttagcagagcagttcgacaaaatccaaaccaagtctaagtttattttcatatgaattaaaagcaagtgttagaacat |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7605783 |
caaaatcagttaggtgtcattatttagcagagcagttcgacaaaatccaaaccaagtctaagtttattttcatatgaattaaaagcaagtgttagaacat |
7605882 |
T |
|
| Q |
101 |
atgacaatttacaaatttnnnnnnnnnnnnnnnnnncttgaaactaagtgcataccagaattcttgaagttacatcagtcatcagatgcagtcaattagt |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
7605883 |
atgacaatttacaaatttaaaaaaaaaatt-------ttgaaactaagtgcataccagaattctagaagttacatcaatcatcagatgcagtcaattagt |
7605975 |
T |
|
| Q |
201 |
tgttgataactttatgagtcatcttat |
227 |
Q |
| |
|
||||| ||||||||||||||||||||| |
|
|
| T |
7605976 |
tgttggtaactttatgagtcatcttat |
7606002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 31769337 - 31769563
Alignment:
| Q |
1 |
caaaattagttaggtgtcattatttagcagagcagttcgacaaaatccaaaccaagtctaagtttattttcatatgaattaaaagcaagtgttagaacat |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31769337 |
caaaatcagttaggtgtcattatttagcagagccgttcgacaaaatccaaaccaagtctaagtttattttcatatgaattaaaagcaagtgttagaacat |
31769436 |
T |
|
| Q |
101 |
atgacaatttacaaatttnnnnnnnnnnnnnnnnnncttgaaactaagtgcataccagaattcttgaagttacatcagtcatcagatgcagtcaattagt |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
31769437 |
atgacaatttacaaattaaaaaaaaaaaaaaaaaaacttgaaactaagtgcataccagaattctagaagttacatcaatcatcagatgcagtcaattagt |
31769536 |
T |
|
| Q |
201 |
tgttgataactttatgagtcatcttat |
227 |
Q |
| |
|
||||| ||||||||||||||||||||| |
|
|
| T |
31769537 |
tgttggtaactttatgagtcatcttat |
31769563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 14186564 - 14186450
Alignment:
| Q |
1 |
caaaattagttaggtgtcattatttagcagagcagttcgacaaaatccaaaccaagtctaagtttattttcatatgaattaaaagcaagtgttagaacat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14186564 |
caaaattagttaggtgtcattatttagcagagcagttcgacaaaatccaaaccaagtctaagtttattttcgtatgaattaaaagcaagtgttagaacat |
14186465 |
T |
|
| Q |
101 |
atgacaatttacaaa |
115 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
14186464 |
aagacaatttacaaa |
14186450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 41812620 - 41812400
Alignment:
| Q |
1 |
caaaattagttaggtgtcattatttagcagagcagttcgacaaaatccaaaccaagtctaagtttattttcatatgaattaaaagcaagtgttagaacat |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41812620 |
caaaatcagttaggtgtcattatttagcagagcagttcgacaaaatccaaaccaagtctaagtttattttcatatgaattaaaagcaagtgttagaacat |
41812521 |
T |
|
| Q |
101 |
atgacaatttacaaatttnnnnnnnnnnnnnnnnnncttgaaactaagtgcataccagaattcttgaagttacatcagtcatcagatgcagtcaattagt |
200 |
Q |
| |
|
| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
41812520 |
acgacaatttacaaatttaaaaaaaaaaaat------ttgaaactaagtgcataccagaattctagaagttacatcaatcatcagatgcagtcaattagt |
41812427 |
T |
|
| Q |
201 |
tgttgataactttatgagtcatcttat |
227 |
Q |
| |
|
||||| ||||||||||||||||||||| |
|
|
| T |
41812426 |
tgttggtaactttatgagtcatcttat |
41812400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 20902300 - 20902404
Alignment:
| Q |
1 |
caaaattagttaggtgtcattatttagcagagcagttcgacaaaatccaaaccaagtctaagtttattttcatatgaattaaaagcaagtgttagaacat |
100 |
Q |
| |
|
|||||| ||||| || |||||||| || |||||||||||||| |||| | ||||||| | || ||||| ||| |||| ||||||||||||||||||||| |
|
|
| T |
20902300 |
caaaatcagttatgtctcattattcagaagagcagttcgacagaatctcagccaagtcaaggtctatttgcatgtgaactaaaagcaagtgttagaacat |
20902399 |
T |
|
| Q |
101 |
atgac |
105 |
Q |
| |
|
||||| |
|
|
| T |
20902400 |
atgac |
20902404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 9796 times since January 2019
Visitors: 7932