View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_high_9 (Length: 658)
Name: NF2071_high_9
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 28692713 - 28692436
Alignment:
| Q |
18 |
gagagtttgagtgaacagtacaaacaaacaatcgtgggttaattttaacccaaaaagaatcaaacaactattcaatcttaatgtgtaacaaagtaacatc |
117 |
Q |
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| T |
28692713 |
gagagtttgagtgaatagtagaaacaaacaatcgtgggttaattttaacccaaaaagaatcaaacaactattcaatcttaatgtgtaacaaa-taacatg |
28692615 |
T |
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| Q |
118 |
aaaatgataaattaa---------------ataggatgttgtggtaatttcttattgactaagaaatgtcgaactagctgaagagcttgtttgggagcaa |
202 |
Q |
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| T |
28692614 |
aaaatgataaattaagagagaagtaattaaataggatgttgtggtaatttcttattgactaagaaatgtcgaactagctgaagagcttgtttgggagcaa |
28692515 |
T |
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| Q |
203 |
aagtaggaacttgatgacaagcacctcttatggtcacaaatgttagcccgtcgtatacaatgttccatcctcccacctg |
281 |
Q |
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| T |
28692514 |
aagtaggaacttgatgaccagcacctcttatggtcacaaatgttagcccgtcgtatacaatgttccatcctcccacctg |
28692436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 343 - 473
Target Start/End: Complemental strand, 28692371 - 28692241
Alignment:
| Q |
343 |
caacttagcataacttggtttacctgacgactagtataccatggagtccaatcttgaactataggaagtcccaattttcttaatgtgtatcttgttgcag |
442 |
Q |
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| T |
28692371 |
caacttagcacaacttggtttacctgacgactagtataccagggagtccaatcttgaactataggaagtcccaattttcttaatgtgtatcttgttgcag |
28692272 |
T |
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| Q |
443 |
ttactggaattcttccatctgtatctccact |
473 |
Q |
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| T |
28692271 |
ttactggaattcttccatctgtatctccact |
28692241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 600 - 641
Target Start/End: Complemental strand, 28692101 - 28692060
Alignment:
| Q |
600 |
aattatttacctgtaaacccatatacgaataccagcagcaat |
641 |
Q |
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| T |
28692101 |
aattatttacctgtaaacccatatacgaataccagcagcaat |
28692060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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