View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_high_96 (Length: 237)
Name: NF2071_high_96
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_high_96 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 8719356 - 8719139
Alignment:
| Q |
1 |
ttgacttttgagcagaaacttggtgaagcagtatttatacctgctggatgccctcaccaagtcagaaatctgaaggtgaaacatctcttatcatataatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8719356 |
ttgacttttgagcagaaacttggtgaagcagtatttatacctgctggatgccctcaccaagtcagaaatctgaaggtgaaacatctcttatcatataatg |
8719257 |
T |
|
| Q |
101 |
ctctttacctaaatttacgtttagaagtacacatatcttgtgattatttgactgaatctatagttaataactttaatcactatattgtaaaatcttgcag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8719256 |
ctctttacctaaatttacgtttagaagtacacatatcttgtgattatttgactgaatctatagttaataactttaatcactatattgtaaaatcttgcag |
8719157 |
T |
|
| Q |
201 |
tcatgcacgaaagttgca |
218 |
Q |
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|||||||||||||||||| |
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| T |
8719156 |
tcatgcacgaaagttgca |
8719139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 3 - 218
Target Start/End: Complemental strand, 8673057 - 8672840
Alignment:
| Q |
3 |
gacttttgagcagaaacttggtgaagcagtatttatacctgctggatgccctcaccaagtcagaaatctgaaggtgaaacatctcttatcatataatgct |
102 |
Q |
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||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
8673057 |
gacttttgagcagaagcttggtgaagcactatttatacctgctggatgccctcaccaagttcgaaatctgaaggtgaaacatctcttatcatataatcct |
8672958 |
T |
|
| Q |
103 |
ctttacctaaatttacgtttagaagtaca--catatcttgtgattatttgactgaatctatagttaataactttaatcactatattgtaaaatcttgcag |
200 |
Q |
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||||||||||||||| ||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8672957 |
ctttacctaaatttaagtttaaaagtacatgtatatcttttgattatttgactgaatctatagttaataactttaatcactatattgtaaaatcttgcag |
8672858 |
T |
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| Q |
201 |
tcatgcacgaaagttgca |
218 |
Q |
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|||||||| ||||||||| |
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| T |
8672857 |
tcatgcacaaaagttgca |
8672840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 8591519 - 8591301
Alignment:
| Q |
1 |
ttgacttttgagcagaaacttggtgaagcagtatttatacctgctggatgccctcaccaagtcagaaatctgaaggtgaaacatctcttatcatataatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8591519 |
ttgacttttgagcagaaacttggtgaagcagtatttatacttgctggatgccctcaccaagtcagaaatctgaaggtgaaacatctcttatcatataatt |
8591420 |
T |
|
| Q |
101 |
ctctttacctaaatttacg-tttagaagtacacatatcttgtgattatttgactgaatctatagttaataactttaatcactatattgtaaaatcttgca |
199 |
Q |
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| T |
8591419 |
ctcttgacttaaatttaagcttaaaaagtacaagtaacttgtggttatttgactgaatctatagttagtaactctaatcactatattgtaaaatcttgca |
8591320 |
T |
|
| Q |
200 |
gtcatgcacgaaagttgca |
218 |
Q |
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||||||||||||| ||||| |
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| T |
8591319 |
gtcatgcacgaaaattgca |
8591301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 23439834 - 23439930
Alignment:
| Q |
3 |
gacttttgagcagaaacttggtgaagcagtatttatacctgctggatgccctcaccaagtcagaaatctgaaggtgaaacatctcttatcatataat |
99 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
23439834 |
gacttttgagcagaagcttggtgaagcagtatttatacctgctggatgccctcaccaagttcgaaatctgaaggtgtaacatctcttatcatataat |
23439930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 134 - 217
Target Start/End: Complemental strand, 5116184 - 5116101
Alignment:
| Q |
134 |
tatcttgtgattatttgactgaatctatagttaataactttaatcactatattgtaaaatcttgcagtcatgcacgaaagttgc |
217 |
Q |
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||||| |||||||||||| || |||||| ||||||||| ||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
5116184 |
tatctagtgattatttgattgtatctatttttaataactctaaatactatattgtaaaatcttgcagtcatgcacaaaagttgc |
5116101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 55410164 - 55410078
Alignment:
| Q |
3 |
gacttttgagcagaaacttggtgaagcagtatttatacctgctggatgccctcaccaagtcagaaatctgaaggtgaaacatctctt |
89 |
Q |
| |
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|||||||||||| |||||||| || ||||||||||| |||||||||||||| || |||||||| ||||| ||||| ||| ||||||| |
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| T |
55410164 |
gacttttgagcaaaaacttggggaggcagtatttattcctgctggatgcccacatcaagtcaggaatcttaaggtaaaatatctctt |
55410078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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