View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_high_97 (Length: 237)
Name: NF2071_high_97
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_high_97 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 14443180 - 14442960
Alignment:
| Q |
1 |
cccatgaccttgactggtaatttaaccaaggaatataaatatatttatgaactgccacagttacggaatcaagacaactacgatacctgctttctcatcc |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14443180 |
cccatgaccttgtctggtaatttaaccaaggaatataaatctatttatgaactgccacagttacggaatcaagacaactacgatacctgctttctcatcc |
14443081 |
T |
|
| Q |
101 |
attctttaacagaaacaccatcttgagcctcaacatacgcctgcccaccaagcatggctggaagaagtccaattgaaattttgattttctctggccacgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
14443080 |
attctttaacagaaacaccatcttgagcctcaacatacgcctgcccaccaagcatggctggaagaagtcctattgaaattttgattttctctggccacgt |
14442981 |
T |
|
| Q |
201 |
cagcatctcattattcctcaa |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
14442980 |
cagcatctcattattcctcaa |
14442960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 18576788 - 18576568
Alignment:
| Q |
1 |
cccatgaccttgactggtaatttaaccaaggaatataaatatatttatgaactgccacagttacggaatcaagacaactacgatacctgctttctcatcc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18576788 |
cccatgaccttgactggtaatttaaccaacgaatataaatctatttatgaactgccacagttacggaatcaagacaactacgatacctgctttctcatcc |
18576689 |
T |
|
| Q |
101 |
attctttaacagaaacaccatcttgagcctcaacatacgcctgcccaccaagcatggctggaagaagtccaattgaaattttgattttctctggccacgt |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
18576688 |
attctttaacagaaacaccatcttgagcctcaacatacgcctgcccaccaagcatggctggaagaagtccaattgaaattttgattttctctgaccacgt |
18576589 |
T |
|
| Q |
201 |
cagcatctcattattcctcaa |
221 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
18576588 |
cagcatctcattattcctcaa |
18576568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 6 - 221
Target Start/End: Complemental strand, 38321438 - 38321223
Alignment:
| Q |
6 |
gaccttgactggtaatttaaccaaggaatataaatatatttatgaactgccacagttacggaatcaagacaactacgatacctgctttctcatccattct |
105 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38321438 |
gaccttgactggtaatttaggcaaggaatataaatatattaatgaactgccacagttacggaatcaagacaactatcatacctgctttctcatccattct |
38321339 |
T |
|
| Q |
106 |
ttaacagaaacaccatcttgagcctcaacatacgcctgcccaccaagcatggctggaagaagtccaattgaaattttgattttctctggccacgtcagca |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||| ||||||| |
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|
| T |
38321338 |
ttaacagaaacaccatcttgagcctcaacatacgcctgcccaccaagcatagctggaagaagtccaattgcgaatttgattttctctggccaggtcagca |
38321239 |
T |
|
| Q |
206 |
tctcattattcctcaa |
221 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
38321238 |
tctcattattcctcaa |
38321223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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