View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_high_99 (Length: 236)
Name: NF2071_high_99
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_high_99 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 3 - 221
Target Start/End: Complemental strand, 7383744 - 7383521
Alignment:
| Q |
3 |
gaatattataaggttttgtttgaaaatggcaatgttttagcttacgccttacagtgaatgatcttataaacttatgtgattaaaatagatttgtttgtc- |
101 |
Q |
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| T |
7383744 |
gaatattataaggttttgtttgaaaatggcaatgtttgagcttacgccttacagtgaatgatcttataaactcatgtgattaaaatagatttgtttgtca |
7383645 |
T |
|
| Q |
102 |
---nnnnnnnnnnttctgccaagagtttataaca-ttttttactgacttatatatannnnnnnnnataattgacttctaatagggtttgaaaatttatag |
197 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7383644 |
aaaaaaaaaaaaattctgccaagagtttataacatttttttactgacttatatatttttttttttataattgacttctaatagggtttgaaaatttatag |
7383545 |
T |
|
| Q |
198 |
cttacgaattacgatttcttttct |
221 |
Q |
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|||||||||||||||||||||||| |
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| T |
7383544 |
cttacgaattacgatttcttttct |
7383521 |
T |
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