View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2071_low_1 (Length: 860)
Name: NF2071_low_1
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 674; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 674; E-Value: 0
Query Start/End: Original strand, 120 - 842
Target Start/End: Complemental strand, 9571793 - 9571071
Alignment:
| Q |
120 |
cttcctagttaactaacctcattttacccttgtcgaagttatttcattgtaaagtttaatttgtatattggatgtggctcnnnnnnngcagaagccggcg |
219 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9571793 |
cttcatagttaactaacctcattttacccttgtcgaagttatttcattgtaaagtttaatttgtatattggatgtggctctttttttgcagaagccggcg |
9571694 |
T |
|
| Q |
220 |
tcattactctcaaatctcagcatatattttttatgctttggatatatgttatggatctctcattatattatgcacaataatctgtcttatacaattcaac |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9571693 |
tcattactctcaaatctcagcatatattttttatgctttggatatatgttatggatctctcattatattatgcacaataatctgtcttatacaattcaac |
9571594 |
T |
|
| Q |
320 |
cccctccctaaaaaatataccaagagtcaaactttttagaaacagcttgtgtacgttaaaattagcttctgcgtttcaaatattttcaaaattatctgca |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9571593 |
cccctccctaaaaaatataccaagagtcaaactttttagaaacagcttgtgtacgttaaaattagcttctgcgtttcaaatattttcaaaattatctgca |
9571494 |
T |
|
| Q |
420 |
ttaatttttctttaaacatctttaagtttatatatacctctttataagtaaatttgtgatattattgtgaaacaaaatgtgatctaaattgtatccaatt |
519 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9571493 |
ttaatttttctttaaacatctttaagtttatatatacctctttataagtaaatttgtgatattattgtgaaacaaaatgtgatctaaattggatccaatt |
9571394 |
T |
|
| Q |
520 |
ccatatcatgttctatacacaaattgttattgaggacacattctgctgatgtccctttcatatcatcataaaatttcacgaatgctgcgattgttgactg |
619 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9571393 |
ccatatcatgttctatacacaaattgttattgaggacacattctgctgatgtccctttcatatcatcgtaaaatttcacgaatgctgcgattgttgactg |
9571294 |
T |
|
| Q |
620 |
ttattaagctttgaatgtgtccctttaatagactccagcattgtatgctgcgattgttgaccgttactaaactttgaatggacgagattacacttctttt |
719 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9571293 |
ttattaaactttgaatgtgtccctttaatagactgcagcattgtatgctgcgattgttgaccgttactaaactttgaatggacgagattacacttctttt |
9571194 |
T |
|
| Q |
720 |
cggtacgtaaaatttcacgtgaaaggattcattctcaaatgtgtcacatttgtattgatttagtatcaatagctgaatcaaaataataagagaagtgatg |
819 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9571193 |
ccgtacgtaaaatttcacgtgagaggattcattctcaaatgtgtcacatttgtattgatttagtatcaatagctgaatcaaaataataagagaagtgatg |
9571094 |
T |
|
| Q |
820 |
tgtgaactatgtgtttgagactt |
842 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
9571093 |
tgtgaactatgtgtttgagactt |
9571071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 9571912 - 9571853
Alignment:
| Q |
1 |
ttcattgattttaagcttgttgattaaccaactatgtagcaccgacaattcagattgaag |
60 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9571912 |
ttcattgattttaagcttgttgattaaccaactatgtagcaccgacaattcagattgaag |
9571853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 60
Target Start/End: Original strand, 3522085 - 3522115
Alignment:
| Q |
30 |
aactatgtagcaccgacaattcagattgaag |
60 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
3522085 |
aactatgtagcaccgacaattcagattgaag |
3522115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 13553 times since January 2019
Visitors: 8302