View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2071_low_102 (Length: 236)

Name: NF2071_low_102
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2071_low_102
NF2071_low_102
[»] chr5 (2 HSPs)
chr5 (1-221)||(8939865-8940084)
chr5 (4-48)||(2818988-2819032)
[»] chr8 (3 HSPs)
chr8 (1-121)||(33474256-33474378)
chr8 (1-56)||(6863077-6863132)
chr8 (2-62)||(34018225-34018285)
[»] chr1 (3 HSPs)
chr1 (5-51)||(7890420-7890466)
chr1 (1-119)||(41625523-41625643)
chr1 (1-54)||(27925360-27925413)
[»] chr6 (1 HSPs)
chr6 (4-54)||(12329717-12329767)
[»] chr4 (2 HSPs)
chr4 (1-46)||(8482372-8482417)
chr4 (5-94)||(15835312-15835400)
[»] chr7 (1 HSPs)
chr7 (1-39)||(46981398-46981436)


Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 8939865 - 8940084
Alignment:
Q  1 caccattggatcaataagtttcaccattaaattaattgaaatatgatgtgatttttggatccaacgatagaaagtaaacttgtgcatagtgcaaataatt 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  8939865 caccattggatcaataagtttcaccgttaaattaattgaaatatgatgtgatttttggatccaacgatagaaagtaaacttgtgcattgtgcaagtaatt 8939964  T
Q  101 tacttgtgcatgttagacaaaaccatcagtaatattatgatgaccatcaggcaccgaattgacgaatttgattgagtaaagataatcggtatttttcaaa 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8939965 tacttgtgcatgttagacaaaaccat-agtaatattatgatgaccatcaggcaccgaattgacgaatttgattgagtaaagataatcggtatttttcaaa 8940063  T
Q  201 tgaaaattttgagaatcagag 221  Q
    |||||||||||||||||||||    
T  8940064 tgaaaattttgagaatcagag 8940084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 2818988 - 2819032
Alignment:
Q  4 cattggatcaataagtttcaccattaaattaattgaaatatgatg 48  Q
    |||||||||||||| | ||||||||| ||||| ||||||||||||    
T  2818988 cattggatcaataaatctcaccattagattaaatgaaatatgatg 2819032  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 33474256 - 33474378
Alignment:
Q  1 caccattggatcaataagtttcaccattaaattaattgaaatatgatgtgatttttggatccaacgatagaaagtaaacttgtgcatagtgcaaa--taa 98  Q
    ||||||| ||||||||||||||||||||||||||| | |||||| |||| |||| |  |||||| | || || ||  |||||||||| |||||||  |||    
T  33474256 caccatttgatcaataagtttcaccattaaattaaataaaatataatgtaatttataaatccaatgctaaaatgtcgacttgtgcatggtgcaaaagtaa 33474355  T
Q  99 tttacttgtgcatgttagacaaa 121  Q
    || |||| |||||||||||||||    
T  33474356 ttaacttatgcatgttagacaaa 33474378  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 6863077 - 6863132
Alignment:
Q  1 caccattggatcaataagtttcaccattaaattaattgaaatatgatgtgattttt 56  Q
    ||||||||||||||||| | ||||||||||||||| ||||||||||||||| ||||    
T  6863077 caccattggatcaataaatctcaccattaaattaaatgaaatatgatgtgactttt 6863132  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 34018285 - 34018225
Alignment:
Q  2 accattggatcaataagtttcaccattaaattaattgaaatatgatgtgatttttggatcc 62  Q
    |||||||||||||||| || |||||||||||||| ||| | ||||| ||| |||| |||||    
T  34018285 accattggatcaataaattccaccattaaattaaatgagaaatgatttgactttttgatcc 34018225  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 7890420 - 7890466
Alignment:
Q  5 attggatcaataagtttcaccattaaattaattgaaatatgatgtga 51  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||    
T  7890420 attggatcaataaatttcaccattaaattaaatgaaatatgatgtga 7890466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 41625523 - 41625643
Alignment:
Q  1 caccattggatcaataagtttcaccattaaattaattgaaatatgatgtgatttttggatccaacgatagaaagtaaacttgtgcatagtgcaaa--taa 98  Q
    ||||||| ||||||||| |||||| |||||||||| | |||||||||| ||||  | ||||||| | |||||| || ||||||  || |||||||  |||    
T  41625523 caccattagatcaataaatttcactattaaattaaataaaatatgatgagattcattgatccaatggtagaaaatagacttgtatatggtgcaaaagtaa 41625622  T
Q  99 tttacttgtgcatgttagaca 119  Q
    ||| ||| |||||||||||||    
T  41625623 tttgcttatgcatgttagaca 41625643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 27925413 - 27925360
Alignment:
Q  1 caccattggatcaataagtttcaccattaaattaattgaaatatgatgtgattt 54  Q
    ||||||||||||||||| |||||  ||||||| || ||| ||||||||||||||    
T  27925413 caccattggatcaataaatttcatgattaaataaaatgagatatgatgtgattt 27925360  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 12329717 - 12329767
Alignment:
Q  4 cattggatcaataagtttcaccattaaattaattgaaatatgatgtgattt 54  Q
    ||||| |||||||| ||||||||||||||||||||| |||| |||||||||    
T  12329717 cattgaatcaataaatttcaccattaaattaattgagatattatgtgattt 12329767  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 8482372 - 8482417
Alignment:
Q  1 caccattggatcaataagtttcaccattaaattaattgaaatatga 46  Q
    ||||||||| ||||||| ||||||||||||||||| ||||||||||    
T  8482372 caccattggttcaataaatttcaccattaaattaaatgaaatatga 8482417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 15835400 - 15835312
Alignment:
Q  5 attggatcaataagtttcaccattaaattaattgaaatatgatgtgatttttggatccaacgatagaaagtaaacttgtgcatagtgcaa 94  Q
    ||||||||||||| |||||| ||||| | || | |||||||||| || |||| |||| || |||| ||| ||||||||||||| ||||||    
T  15835400 attggatcaataaatttcacgattaagtgaaataaaatatgatgcgactttttgatctaatgata-aaaataaacttgtgcatggtgcaa 15835312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 46981436 - 46981398
Alignment:
Q  1 caccattggatcaataagtttcaccattaaattaattga 39  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  46981436 caccattggatcaataatttacaccattaaattaattga 46981398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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