View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_low_107 (Length: 226)
Name: NF2071_low_107
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_low_107 |
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Alignment Details
Target: chr3 (Bit Score: 58; Significance: 1e-24; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 6557680 - 6557623
Alignment:
| Q |
162 |
tgtacacaggcacatcatatgcagcagtttatatctaataacttccttatgtatggca |
219 |
Q |
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| T |
6557680 |
tgtacacaggcacatcatatgcagcagtttatatctaataacttccttatgtatggca |
6557623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 6557722 - 6557675
Alignment:
| Q |
7 |
cttatctacctaaaccatgtatgaaacagaaagtaagcagattgtaca |
54 |
Q |
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| T |
6557722 |
cttatctacctaaaccatgtatgaaacagaaagtaagcagattgtaca |
6557675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 6549271 - 6549226
Alignment:
| Q |
7 |
cttatctacctaaaccatgtatgaaacagaaagtaagcagattgta |
52 |
Q |
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| T |
6549271 |
cttatctacctaaaccatgtacgaaacagaaagtaagcagattgta |
6549226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 136
Target Start/End: Complemental strand, 6549003 - 6548945
Alignment:
| Q |
77 |
tagaataagaggtgaaatctccaaatcattattagctttcacaagtgtatcccctaagtt |
136 |
Q |
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| T |
6549003 |
tagaataagagctgaaatgtccaaatcatta-tagcttgcacaagtgtatcccgtaagtt |
6548945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 6451871 - 6451810
Alignment:
| Q |
11 |
tctacctaaaccatgtatgaaacagaaagtaagcagattgtacattaaattacccttaaaat |
72 |
Q |
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| T |
6451871 |
tctacctaaaccatgtacgaaacaaaaatcaagcagtttgtaaatttaattacccttaaaat |
6451810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 132
Target Start/End: Complemental strand, 6797781 - 6797722
Alignment:
| Q |
74 |
atttagaataagaggtgaaatctccaaatcatt-attagctttcacaagtgtatccccta |
132 |
Q |
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| T |
6797781 |
atttagaatgtgagatgaaatctccaaatcattaattagcttgcacaagtgtatcaccta |
6797722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 6848054 - 6848003
Alignment:
| Q |
7 |
cttatctacctaaaccatgtatgaaacagaaagtaagcagattgtacattaa |
58 |
Q |
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| T |
6848054 |
cttatctatctaaaccatgtatttaacagaaagtaagcagattttaaattaa |
6848003 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 31981825 - 31981775
Alignment:
| Q |
73 |
gatttagaataagaggtgaaatct-ccaaatcattattagctttcacaagt |
122 |
Q |
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|
| T |
31981825 |
gatttagaataagaggtgaaatgtaccaaatcattattagctttcacaagt |
31981775 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 31981775 - 31981734
Alignment:
| Q |
147 |
tatcaaaccgttttgtgtacacaggcacatcatatgcagcag |
188 |
Q |
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| T |
31981775 |
tatcaaactattttgtgtacacaggcacatcatatgcagcag |
31981734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 42151269 - 42151329
Alignment:
| Q |
76 |
ttagaataagaggtgaaatctccaaatcattattagctttcacaagtgtatcccctaagtt |
136 |
Q |
| |
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||||||| | || |||||||||||||| ||||||| ||| ||||| |||||| |||||||| |
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| T |
42151269 |
ttagaatgaaagatgaaatctccaaattattattaacttgcacaaatgtatcacctaagtt |
42151329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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