View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_low_11 (Length: 566)
Name: NF2071_low_11
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 297 - 556
Target Start/End: Original strand, 32679640 - 32679899
Alignment:
| Q |
297 |
aggtttagaagtcaggtacaaccataaaggatgaaaaggtttagaagtcaggtacaacccacaaaggatgaaaaccaacaatacttgtttgttatctcaa |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
32679640 |
aggtttagaagtcaggtacaaccataaaggatgaaaaggtttagaagtcaggtacaacccataaaggatgaaaaccaacaatacttgtttgttatcttaa |
32679739 |
T |
|
| Q |
397 |
atatcatgtaaaacacatcataacagcttagctacatgaagaaagagactccatatatgcaaaaatagcatcgcacagttttcaatagaacacatgacag |
496 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32679740 |
atatcatgtaaaacacatcctaacagcttagctacatgaagaaagagactccatatatgcaaaaatagcatcgcacagttttcaatagaacacatgacag |
32679839 |
T |
|
| Q |
497 |
ttcaaataatgagcggaattataataccttctatacaagtagtgcagcgagttgcctttg |
556 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32679840 |
ttcaaataatgagcggaattataataccttatatacaagtagtgcagcgagttgcctttg |
32679899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 323 - 370
Target Start/End: Original strand, 32679630 - 32679676
Alignment:
| Q |
323 |
aaggatgaaaaggtttagaagtcaggtacaacccacaaaggatgaaaa |
370 |
Q |
| |
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| T |
32679630 |
aaggatgaaaaggtttagaagtcaggtacaa-ccataaaggatgaaaa |
32679676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 142; Significance: 3e-74; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 39 - 228
Target Start/End: Complemental strand, 2230893 - 2230704
Alignment:
| Q |
39 |
cttgaaagatctgcatgcaggtttaaattaaatagaataaaaccaaataacaatcctcacctagaagagtatggacatattcagaatcctgtgaaacatc |
138 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2230893 |
cttgaaagatctgcatacagctttaaattaaatagaataaaaccaaataacaattctcacctagaagagtatggacatggtcagaatcctgtgaaacatc |
2230794 |
T |
|
| Q |
139 |
aaacagaggaccagctccaaaggcataggataatgaatcattcagctcgcccaagtaataaaagacctaagattaaggagcaaaacaaaa |
228 |
Q |
| |
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|||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||| ||||||||||||| ||||||| ||| |||| |
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| T |
2230793 |
aaacagaggaccagctccaagggcataggatagtgagtcattcagctcgcccaagtaattaaagacctaagataaaggagcgaaaaaaaa |
2230704 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 334 - 500
Target Start/End: Complemental strand, 2230609 - 2230444
Alignment:
| Q |
334 |
ggtttagaagtcaggtacaacccacaaaggatgaaaaccaacaatacttgtttgttatctcaaatatcatgtaaaacacatcataacagcttagctacat |
433 |
Q |
| |
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|||||||||| ||||||||| | | |||||||||| || | |||| || |||| |||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
2230609 |
ggtttagaagccaggtacaatcaa-aaaggatgaaggccgaaaatatttatttgctatctcaaatatcatgtaaaacacatcataacagcttagccacat |
2230511 |
T |
|
| Q |
434 |
gaagaaagagactccatatatgcaaaaatagcatcgcacagttttcaatagaacacatgacagttca |
500 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| | ||| ||||||||||| |||||||||| |
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|
| T |
2230510 |
gaagaaagagactccatatatgcaaaaacagcatcgctcggttatcaatagaacatgtgacagttca |
2230444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 252 - 331
Target Start/End: Complemental strand, 2230655 - 2230576
Alignment:
| Q |
252 |
gaataataatatgtggatatgaaaaaacttaaggcctccggtgataggtttagaagtcaggtacaaccataaaggatgaa |
331 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||| |||||| |||||||||| ||||||||| || |||||||||| |
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| T |
2230655 |
gaataataatatatggatataaaaaaacttaaggcctctggtgattggtttagaagccaggtacaatcaaaaaggatgaa |
2230576 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 7e-66; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 40 - 250
Target Start/End: Original strand, 28135719 - 28135930
Alignment:
| Q |
40 |
ttgaaagatctgcatgcaggtttaaattaaatagaataaaaccaaataacaatcctcacctagaagagtatggacatattcagaatcctgtgaaacatca |
139 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||| | || |||||||||||||||||| ||||| |||||||||||||| |||||| |
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|
| T |
28135719 |
ttgaaagatctgcatacagctttaaattaaatagaataaaaccaaatagcgattctcacctagaagagtatgaacatagtcagaatcctgtgacacatca |
28135818 |
T |
|
| Q |
140 |
aacagaggaccagctccaaaggcataggataatgaatcattcagctcgcccaagtaataaaagacctaagattaaggagcaaaacaaaatcagat-gcca |
238 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||| ||||||||||| |||||||||||||| ||||||||| ||||||| ||| ||||| |||| | | |
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| T |
28135819 |
aacagaggaccagctccaagggcataggatagtgagtcattcagctcacccaagtaataaaatacctaagataaaggagcgaaaaaaaattagatagtaa |
28135918 |
T |
|
| Q |
239 |
aaacacaaacca |
250 |
Q |
| |
|
|||||||||||| |
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|
| T |
28135919 |
aaacacaaacca |
28135930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 359 - 556
Target Start/End: Original strand, 28136025 - 28136218
Alignment:
| Q |
359 |
aaaggatgaaaaccaacaatacttgtttgttatctcaaatatcatgtaaaacacatcataacagcttagctacatgaagaaagagactccatatatgc-a |
457 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
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| T |
28136025 |
aaaggatgaaagccaacaatacttatttgttatctcaaatatcatgtaaaacacatcataac-----agctacatgaagaaagagactccatatatgcaa |
28136119 |
T |
|
| Q |
458 |
aaaatagcatcgcacagttttcaatagaacacatgacagttcaaataatgagcggaattataataccttctatacaagtagtgcagcgagttgcctttg |
556 |
Q |
| |
|
|||| ||||||||| ||| |||||||||| |||||||||||||||||||| ||| ||| |||||| |||| |||||||| || ||||||||||| |
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|
| T |
28136120 |
aaaacagcatcgcatagtcaccaatagaacatgtgacagttcaaataatgagcagaacaatactaccttggatacgagtagtgcggcaagttgcctttg |
28136218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 332
Target Start/End: Original strand, 28135955 - 28136035
Alignment:
| Q |
252 |
gaataataatatgtggatatgaaaaaacttaaggcctccggtgataggtttagaagtcaggtacaaccataaaggatgaaa |
332 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| ||| |||||| |||||||||| | ||||||| | ||||||||||| |
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|
| T |
28135955 |
gaataataatatagggatatgaaaaaacataaggactctggtgattggtttagaagccgggtacaataaaaaaggatgaaa |
28136035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 4e-64; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 62 - 250
Target Start/End: Complemental strand, 44807101 - 44806913
Alignment:
| Q |
62 |
taaattaaatagaataaaaccaaataacaatcctcacctagaagagtatggacatattcagaatcctgtgaaacatcaaacagaggaccagctccaaagg |
161 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| || |
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|
| T |
44807101 |
taaattaaatagaataaaaataaataacaattctcacctagaagagtatggacatagtcagaatcctgtgaaacatcaaacaggggaccagctccaaggg |
44807002 |
T |
|
| Q |
162 |
cataggataatgaatcattcagctcgcccaagtaataaaagacctaagattaaggagcaaaacaaaatcagatgccaaaacacaaacca |
250 |
Q |
| |
|
||||||||| ||| ||||||| |||||||||||||||||||||||||||| ||||||| || |||||||||| | |||| |||||||| |
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|
| T |
44807001 |
cataggatagtgagtcattcaactcgcccaagtaataaaagacctaagataaaggagcgaagaaaaatcagatactaaaatacaaacca |
44806913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 387 - 556
Target Start/End: Complemental strand, 44806795 - 44806627
Alignment:
| Q |
387 |
gttatctcaaatatcatgtaaaacacatcataacagcttagctacatgaagaaagagactccatatatgcaaaaatagcatcgcacagttttcaatagaa |
486 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||| |||||||| |||||||||||||| ||||||||| |
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|
| T |
44806795 |
gttatctcaaatatcatgtaaaacacatcataacagcttagctacttgacgaaagagactccgtatgtgcaaaaacagcatcgcacagttatcaatagaa |
44806696 |
T |
|
| Q |
487 |
cacatgacagttcaaataatgagcggaattataataccttctatacaagtagtgcagcgagttgcctttg |
556 |
Q |
| |
|
|| ||||| |||||||||||||| ||| || | |||||| ||||||||| ||| || ||||||||||| |
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|
| T |
44806695 |
catgtgacaattcaaataatgagcagaa-tacactacctttgatacaagtaatgcggcaagttgcctttg |
44806627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 265 - 332
Target Start/End: Complemental strand, 44806873 - 44806806
Alignment:
| Q |
265 |
tggatatgaaaaaacttaaggcctccggtgataggtttagaagtcaggtacaaccataaaggatgaaa |
332 |
Q |
| |
|
|||||||||||||||||||| |||| |||||| |||||||||| | ||||||| || |||| |||||| |
|
|
| T |
44806873 |
tggatatgaaaaaacttaagtcctctggtgattggtttagaagccgggtacaatcaaaaagaatgaaa |
44806806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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