View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2071_low_116 (Length: 205)

Name: NF2071_low_116
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2071_low_116
NF2071_low_116
[»] chr7 (4 HSPs)
chr7 (16-98)||(3818760-3818842)
chr7 (120-193)||(3818667-3818739)
chr7 (20-94)||(33422592-33422665)
chr7 (120-193)||(3808202-3808275)
[»] chr4 (6 HSPs)
chr4 (19-94)||(44589484-44589559)
chr4 (21-92)||(9626542-9626615)
chr4 (20-94)||(43982081-43982154)
chr4 (20-97)||(9641229-9641308)
chr4 (138-193)||(38341073-38341128)
chr4 (18-73)||(36309836-36309891)
[»] chr1 (2 HSPs)
chr1 (20-97)||(4088191-4088268)
chr1 (18-83)||(19214182-19214247)
[»] chr8 (3 HSPs)
chr8 (35-89)||(16932989-16933043)
chr8 (127-183)||(27342467-27342524)
chr8 (41-94)||(27342953-27343008)
[»] chr2 (3 HSPs)
chr2 (26-94)||(11085351-11085419)
chr2 (41-97)||(18034185-18034241)
chr2 (127-187)||(18034286-18034346)


Alignment Details
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 3818842 - 3818760
Alignment:
Q  16 tggtcatccctaattactgctactattactattattgtttttcttcataagtctattagtactattataatcatttgatcttg 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3818842 tggtcatccctaattactgctactattactattattgtttttcttcataagtctattagtactattataatcatttgatcttg 3818760  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 120 - 193
Target Start/End: Complemental strand, 3818739 - 3818667
Alignment:
Q  120 aacaacttaattgataacatttgtcattaaacaaaatcttttattttaaggacaaaatttaggtgcatattctt 193  Q
    ||||||||||||||||| ||||||||||||| |||| ||||||||||||||| |||||| | |||||| |||||    
T  3818739 aacaacttaattgataatatttgtcattaaa-aaaaacttttattttaaggataaaattgatgtgcattttctt 3818667  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 33422665 - 33422592
Alignment:
Q  20 catccctaattactgctactattactattattgtttttcttcataagtctattagtactattataatcatttgat 94  Q
    |||||||| ||||||||||||||||||||||| ||   ||||||||||||| || || ||||||| |||||||||    
T  33422665 catccctatttactgctactattactattatttttccccttcataagtctactatta-tattatattcatttgat 33422592  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 120 - 193
Target Start/End: Complemental strand, 3808275 - 3808202
Alignment:
Q  120 aacaacttaattgataacatttgtcattaaacaaaatcttttattttaaggacaaaatttaggtgcatattctt 193  Q
    |||||||||||||  |||||||||||||||| ||||   | |||||| ||||||||| || ||||||| |||||    
T  3808275 aacaacttaattgccaacatttgtcattaaaaaaaaatatatatttttaggacaaaactttggtgcattttctt 3808202  T

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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 44589559 - 44589484
Alignment:
Q  19 tcatccctaattactgctactattactattattgtttttcttcataagtctattagtactattataatcatttgat 94  Q
    ||||||||||||||||||| | |||||||| ||||||| ||||||||||||| || |||||||||| |||| ||||    
T  44589559 tcatccctaattactgctattgttactattcttgttttccttcataagtctaatattactattatattcatctgat 44589484  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 9626615 - 9626542
Alignment:
Q  21 atccctaattactgctactattactattattgttttt--cttcataagtctattagtactattataatcatttg 92  Q
    ||||||||||||||| ||||||||||||||| |||||  |||||||||||||||| || ||||||| |||||||    
T  9626615 atccctaattactgccactattactattattttttttcccttcataagtctattattaatattatattcatttg 9626542  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 43982081 - 43982154
Alignment:
Q  20 catccctaattactgctactattactattattgtttttcttcataagtctattagtactattataatcatttgat 94  Q
    |||| ||||||| |||| || ||||||||||| |||| |||||||||||||||| |||||||||| |||||||||    
T  43982081 catctctaattagtgctgctgttactattatt-ttttccttcataagtctattattactattatattcatttgat 43982154  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 9641308 - 9641229
Alignment:
Q  20 catccctaattactgctactattactattattgttttt--cttcataagtctattagtactattataatcatttgatctt 97  Q
    |||||||||||| ||||| ||||||||||||| |||||  |||||||||||||| | || ||||||| ||||||| ||||    
T  9641308 catccctaattaatgctattattactattattttttttcccttcataagtctataattaatattatattcatttgttctt 9641229  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 193
Target Start/End: Complemental strand, 38341128 - 38341073
Alignment:
Q  138 atttgtcattaaacaaaatcttttattttaaggacaaaatttaggtgcatattctt 193  Q
    ||||||||||||| |||||| ||| ||||||||| ||||||||||||||| |||||    
T  38341128 atttgtcattaaaaaaaatcatttgttttaaggataaaatttaggtgcattttctt 38341073  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 36309836 - 36309891
Alignment:
Q  18 gtcatccctaattactgctactattactattattgtttttcttcataagtctatta 73  Q
    |||||| ||||||| | ||||||||||||||||  |||| ||||||||||||||||    
T  36309836 gtcatctctaattatttctactattactattatctttttccttcataagtctatta 36309891  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 4088268 - 4088191
Alignment:
Q  20 catccctaattactgctactattactattattgtttttcttcataagtctattagtactattataatcatttgatctt 97  Q
    ||||||||||||||  |||||||||||||||| ||| |||||||||||||| |  |||||||||| | ||||||||||    
T  4088268 catccctaattactcttactattactattattttttctcttcataagtctactgttactattatatttatttgatctt 4088191  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 19214182 - 19214247
Alignment:
Q  18 gtcatccctaattactgctactattactattattgtttttcttcataagtctattagtactattat 83  Q
    |||||||||||||| || |||| |||||||||||||||| ||||||  |||||||| || ||||||    
T  19214182 gtcatccctaattattgttacttttactattattgttttacttcatttgtctattattattattat 19214247  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 35 - 89
Target Start/End: Complemental strand, 16933043 - 16932989
Alignment:
Q  35 ctactattactattattgtttttcttcataagtctattagtactattataatcat 89  Q
    ||||||||||||||||| |||| |||||||||||||||| |||| ||||| ||||    
T  16933043 ctactattactattatttttttccttcataagtctattattactgttatattcat 16932989  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 27342524 - 27342467
Alignment:
Q  127 taattgataacatttgtcattaaacaa-aatcttttattttaaggacaaaatttaggt 183  Q
    |||||| ||||||||||||||||| || |||| ||||||||||||| ||||| |||||    
T  27342524 taattgctaacatttgtcattaaagaagaatcatttattttaaggataaaatgtaggt 27342467  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 27343008 - 27342953
Alignment:
Q  41 ttactattattgtttttcttcataagtctattagtac--tattataatcatttgat 94  Q
    |||||||||||||||||||||||||||| | || |||  ||||||| |||||||||    
T  27343008 ttactattattgtttttcttcataagtcgactattactatattatactcatttgat 27342953  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 11085351 - 11085419
Alignment:
Q  26 taattactgctactattactattattgtttttcttcataagtctattagtactattataatcatttgat 94  Q
    |||||| || ||||| |||||||||||||| ||||| ||| | ||||| |||||||||| |||||||||    
T  11085351 taattaatgttactactactattattgtttatcttcgtaaatatattattactattatattcatttgat 11085419  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 18034185 - 18034241
Alignment:
Q  41 ttactattattgtttttcttcataagtctattagtactattataatcatttgatctt 97  Q
    ||||||||||| ||| ||||| ||||| ||||| |||||||||| ||||||||||||    
T  18034185 ttactattattttttctcttcttaagtttattattactattatattcatttgatctt 18034241  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 18034286 - 18034346
Alignment:
Q  127 taattgataacatttgtcattaaacaaaatcttttattttaaggacaaaatttaggtgcat 187  Q
    |||||| ||| || ||| |||||| |||||| ||||||||||||| |||| ||||||||||    
T  18034286 taattgttaatatgtgttattaaaaaaaatcctttattttaaggagaaaacttaggtgcat 18034346  T

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