View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2071_low_118 (Length: 201)

Name: NF2071_low_118
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2071_low_118
NF2071_low_118
[»] chr1 (3 HSPs)
chr1 (1-185)||(44128091-44128275)
chr1 (1-185)||(44132296-44132480)
chr1 (1-185)||(44140718-44140902)
[»] chr7 (5 HSPs)
chr7 (1-133)||(5290157-5290289)
chr7 (1-133)||(5302026-5302158)
chr7 (1-133)||(5309663-5309795)
chr7 (1-114)||(5283857-5283970)
chr7 (1-114)||(5314499-5314612)
[»] chr5 (6 HSPs)
chr5 (1-128)||(1481680-1481807)
chr5 (1-128)||(1491570-1491697)
chr5 (1-119)||(1477578-1477696)
chr5 (1-111)||(1504351-1504461)
chr5 (1-99)||(1496809-1496907)
chr5 (1-78)||(1485466-1485543)
[»] chr2 (1 HSPs)
chr2 (1-102)||(24165512-24165613)


Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 44128275 - 44128091
Alignment:
Q  1 aggatatgtgctttgttcaacacaattggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcagac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44128275 aggatatgtgctttgttcaacacaattggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcagac 44128176  T
Q  101 acactaaccatattgatatctttggtagcaaatgaaagtctcagttggttttgtttgtagtacttgttgtaattaaagaaagaga 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44128175 acactaaccatattgatatctttggtagcaaatgaaagtctcagttggttttgtttgtagtacttgttgtaattaaagaaagaga 44128091  T

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Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 44132480 - 44132296
Alignment:
Q  1 aggatatgtgctttgttcaacacaattggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcagac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44132480 aggatatgtgctttgttcaacacaattggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcagac 44132381  T
Q  101 acactaaccatattgatatctttggtagcaaatgaaagtctcagttggttttgtttgtagtacttgttgtaattaaagaaagaga 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44132380 acactaaccatattgatatctttggtagcaaatgaaagtctcagttggttttgtttgtagtacttgttgtaattaaagaaagaga 44132296  T

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Target: chr1; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 44140902 - 44140718
Alignment:
Q  1 aggatatgtgctttgttcaacacaattggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcagac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44140902 aggatatgtgctttgttcaacacaattggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcagac 44140803  T
Q  101 acactaaccatattgatatctttggtagcaaatgaaagtctcagttggttttgtttgtagtacttgttgtaattaaagaaagaga 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44140802 acactaaccatattgatatctttggtagcaaatgaaagtctcagttggttttgtttgtagtacttgttgtaattaaagaaagaga 44140718  T

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Target: chr7 (Bit Score: 89; Significance: 4e-43; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 5290157 - 5290289
Alignment:
Q  1 aggatatgtgctttgttcaacacaattggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcagac 100  Q
    |||||| |||||||||||||||||||| ||||| |||||||||||||||||||| || |||||||| ||||||||||||||||| || ||||||||||||    
T  5290157 aggataagtgctttgttcaacacaatttgctggatttgcagtgccaatggctaagatagttgcaggaccttctgccctttgagctttacgaatttcagac 5290256  T
Q  101 acactaaccatattgatatctttggtagcaaat 133  Q
    ||||| ||||| ||||||||||||||| |||||    
T  5290257 acactcaccattttgatatctttggtatcaaat 5290289  T

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Target: chr7; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 5302158 - 5302026
Alignment:
Q  1 aggatatgtgctttgttcaacacaattggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcagac 100  Q
    |||||| |||||||||||||||||||| ||||| |||||||||||||||||||| || |||||||| ||||||||||||||||| || ||||||||||||    
T  5302158 aggataagtgctttgttcaacacaatttgctggatttgcagtgccaatggctaagatagttgcaggaccttctgccctttgagctttacgaatttcagac 5302059  T
Q  101 acactaaccatattgatatctttggtagcaaat 133  Q
    ||||| ||||| ||||||||||||||| |||||    
T  5302058 acactcaccattttgatatctttggtatcaaat 5302026  T

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Target: chr7; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 5309795 - 5309663
Alignment:
Q  1 aggatatgtgctttgttcaacacaattggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcagac 100  Q
    ||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||| |||||||| |||||||| ||||||||||| ||||||||||||    
T  5309795 aggatatgtgctttgttcaacacaatttgctggatttgcagtaccaatggccaaaatagttgcaggaccttctgctctttgagcattacgaatttcagac 5309696  T
Q  101 acactaaccatattgatatctttggtagcaaat 133  Q
    ||||| ||||| ||||||||||| || ||||||    
T  5309695 acactcaccattttgatatctttagttgcaaat 5309663  T

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Target: chr7; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 5283970 - 5283857
Alignment:
Q  1 aggatatgtgctttgttcaacacaattggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcagac 100  Q
    |||||| |||||||||||||||||||| ||||| |||||||| |||||||| || ||||||||||||||||||||||||||||| || ||||||||||||    
T  5283970 aggatacgtgctttgttcaacacaatttgctggatttgcagtcccaatggccaagatggttgcagggccttctgccctttgagctttacgaatttcagac 5283871  T
Q  101 acactaaccatatt 114  Q
    ||||| ||||||||    
T  5283870 acactcaccatatt 5283857  T

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Target: chr7; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 5314612 - 5314499
Alignment:
Q  1 aggatatgtgctttgttcaacacaattggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcagac 100  Q
    ||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||| |||||||| |||||||| || ||||||||||||    
T  5314612 aggatatgtgctttgttcaacacaatttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacgaatttcagac 5314513  T
Q  101 acactaaccatatt 114  Q
    ||||| ||||||||    
T  5314512 acactcaccatatt 5314499  T

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Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 1481807 - 1481680
Alignment:
Q  1 aggatatgtgctttgttcaacacaattggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcagac 100  Q
    |||||||||||||||||||||||| || ||||| ||||||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||||||     
T  1481807 aggatatgtgctttgttcaacacagtttgctggatttgcagtgccaatggccaatatggttgcaggaccttctgccctttgagccttgcgaatttcagat 1481708  T
Q  101 acactaaccatattgatatctttggtag 128  Q
    ||||| ||||| ||| ||| ||||||||    
T  1481707 acactcaccatcttggtatttttggtag 1481680  T

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Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 1491697 - 1491570
Alignment:
Q  1 aggatatgtgctttgttcaacacaattggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcagac 100  Q
    |||||||||||||||||||||||| || ||||| ||||||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||||||     
T  1491697 aggatatgtgctttgttcaacacagtttgctggatttgcagtgccaatggccaatatggttgcaggaccttctgccctttgagccttgcgaatttcagat 1491598  T
Q  101 acactaaccatattgatatctttggtag 128  Q
    ||||| ||||| ||| ||| ||||||||    
T  1491597 acactcaccatcttggtatttttggtag 1491570  T

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Target: chr5; HSP #3
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 1477696 - 1477578
Alignment:
Q  1 aggatatgtgctttgttcaacacaattggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcagac 100  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||| |  ||||| ||||||||||||||||| ||||| ||||||||||||||     
T  1477696 aggatatgtgctttgttcaacacagttggctggatttgcagtgccaatggccatgatggtggcagggccttctgccctctgagccttgcgaatttcagat 1477597  T
Q  101 acactaaccatattgatat 119  Q
    ||||| ||||| |||||||    
T  1477596 acactcaccatcttgatat 1477578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 1504461 - 1504351
Alignment:
Q  1 aggatatgtgctttgttcaacacaattggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcagac 100  Q
    ||||||||||||||||||||||||||| | ||| ||||||||||||||||| |||||||||||||| |||||||| || ||||| ||||||||||||||     
T  1504461 aggatatgtgctttgttcaacacaatttggtggatttgcagtgccaatggccaaaatggttgcaggaccttctgctctctgagccttgcgaatttcagat 1504362  T
Q  101 acactaaccat 111  Q
    ||||| |||||    
T  1504361 acactcaccat 1504351  T

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Target: chr5; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 1496907 - 1496809
Alignment:
Q  1 aggatatgtgctttgttcaacacaattggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcaga 99  Q
    |||||||||||||||||||| |||||| | ||| |||||||||||||| ||||| || |||| |||||||||||||||||||||  | |||||||||||    
T  1496907 aggatatgtgctttgttcaatacaatttgttggatttgcagtgccaatagctaagatagttgtagggccttctgccctttgagcccttcgaatttcaga 1496809  T

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Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 1485543 - 1485466
Alignment:
Q  1 aggatatgtgctttgttcaacacaattggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccct 78  Q
    ||||||||||||||||||||||||||| | ||| |||||||| || ||||| || ||| |||||||||||||||||||    
T  1485543 aggatatgtgctttgttcaacacaatttggtggatttgcagttcctatggccaagatgattgcagggccttctgccct 1485466  T

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Target: chr2 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 24165512 - 24165613
Alignment:
Q  1 aggatatgtgctttgttcaacacaattggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcagac 100  Q
    |||||||||||||||||||||||| || | ||| ||||||||||||||||| || || |||||||||||||||||||||||||| || ||||||||||||    
T  24165512 aggatatgtgctttgttcaacacagtttggtggatttgcagtgccaatggccaagatagttgcagggccttctgccctttgagccttacgaatttcagac 24165611  T
Q  101 ac 102  Q
    ||    
T  24165612 ac 24165613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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