View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2071_low_13 (Length: 561)

Name: NF2071_low_13
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2071_low_13
NF2071_low_13
[»] chr7 (6 HSPs)
chr7 (21-372)||(354417-354768)
chr7 (21-323)||(10580800-10581116)
chr7 (449-553)||(354845-354949)
chr7 (449-553)||(10581244-10581348)
chr7 (39-154)||(10575417-10575532)
chr7 (79-151)||(39954885-39954957)
[»] chr3 (7 HSPs)
chr3 (21-155)||(21584633-21584766)
chr3 (21-151)||(24923500-24923629)
chr3 (21-151)||(25085051-25085180)
chr3 (39-151)||(24497299-24497411)
chr3 (21-151)||(24982059-24982188)
chr3 (21-151)||(31825597-31825726)
chr3 (39-148)||(24919929-24920038)
[»] chr8 (1 HSPs)
chr8 (60-155)||(14261068-14261163)
[»] chr2 (1 HSPs)
chr2 (60-155)||(41027623-41027718)
[»] chr4 (2 HSPs)
chr4 (60-155)||(22898604-22898699)
chr4 (60-155)||(22950272-22950367)


Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 21 - 372
Target Start/End: Original strand, 354417 - 354768
Alignment:
Q  21 agaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaa 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  354417 agaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcatgcaa 354516  T
Q  121 ggaggaagactctgactgctatggatgttgtttatcagggaagaaccctctacagttttggtggatgaagaagatgaagatttgttatgttgtttctttg 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  354517 ggaggaagactctgactgctatggatgttgtttatcagggaagaaccctctacagttttggtggatgaagaagatgaagatttgttatgttgtttctttg 354616  T
Q  221 tatttgtagcatgtgagtgttccgtacaattgttatcattgtaatctaatgaaatgatctttcatggtgaactctgattctaacttatgttaatcccttg 320  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  354617 tatttgtagcatgtgagtgttccatacaattgttatcattgtaatctaatgaaatgatctttcatggtgaactctgattctaacttatgttaatcccttg 354716  T
Q  321 actnnnnnnnttagacaaatacacagtttaatttggtttcgatgaagtacag 372  Q
    |||       ||||||||||||||||||||||||||||||||||||||||||    
T  354717 actaaaaaaattagacaaatacacagtttaatttggtttcgatgaagtacag 354768  T

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Target: chr7; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 21 - 323
Target Start/End: Original strand, 10580800 - 10581116
Alignment:
Q  21 agaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaa 120  Q
    |||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||| |||||  ||||||||||||||||||||||| ||       
T  10580800 agaggatcagtggtttga-tctatgaggaaataagaggactgttgaagattttcttgcagaataagattcttgatgctgttacttacactgagcatg--- 10580895  T
Q  121 ggaggaagactctgactgctatggatgttgtttatcagggaagaaccctctacagttttggtggatgaagaagatgaagatttgttatgttgtttctttg 220  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| | ||||||| ||    
T  10580896 --aggaagactctgactgctatggatgttgtttatcagggaagaaccctctatggttttggtggatgaagaagatgaagatttgttaagctgtttctgtg 10580993  T
Q  221 tatttgtagcatgtgagtgttccgtacaattgttatc--------------------attgtaatctaatgaaatgatctttcatggtgaactctgattc 300  Q
    |||||| | ||||||||||||||||| ||||||||||                    |||||||| ||||||||||||||||||||||||| ||||||||    
T  10580994 tatttgaaacatgtgagtgttccgtataattgttatcgttttgtaagttttatcaagattgtaatataatgaaatgatctttcatggtgaattctgattc 10581093  T
Q  301 taacttatgttaatcccttgact 323  Q
    |||||||||||||||||||||||    
T  10581094 taacttatgttaatcccttgact 10581116  T

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Target: chr7; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 449 - 553
Target Start/End: Original strand, 354845 - 354949
Alignment:
Q  449 gtgagtgtttgttaacttgatttttagtagttttgttattttaacgtcgtggatgcacaggtgttcctttggaaatcgatgaatcgactaaaatccgtac 548  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  354845 gtgagtgtttgttaacttgatttttagtagttttgttattttaacgtcgtggatgcacaggtgttcctttggaaatcgatgaatcgactaaaatccgtac 354944  T
Q  549 ctttg 553  Q
    |||||    
T  354945 ctttg 354949  T

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Target: chr7; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 449 - 553
Target Start/End: Original strand, 10581244 - 10581348
Alignment:
Q  449 gtgagtgtttgttaacttgatttttagtagttttgttattttaacgtcgtggatgcacaggtgttcctttggaaatcgatgaatcgactaaaatccgtac 548  Q
    |||||||||||||||||||||||||  |||||||||||||||||| | |||||||| ||||||||||||||||||| |||||||| |||||||||| ||     
T  10581244 gtgagtgtttgttaacttgattttttttagttttgttattttaacttagtggatgcgcaggtgttcctttggaaattgatgaatccactaaaatccatat 10581343  T
Q  549 ctttg 553  Q
    |||||    
T  10581344 ctttg 10581348  T

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Target: chr7; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 39 - 154
Target Start/End: Original strand, 10575417 - 10575532
Alignment:
Q  39 atctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactg 138  Q
    ||||||||||||| |||||| ||||||||||| |||||| ||||||  ||  | |||||||||||||||||||||| ||| |||||||| ||| ||||||    
T  10575417 atctatgaggaaacaagaggtgtgttgaagatcttcttggagaatgttataagagatgctgttacttacactgagcatgcgaggaggaaaactgtgactg 10575516  T
Q  139 ctatggatgttgttta 154  Q
    ||||||||||||||||    
T  10575517 ctatggatgttgttta 10575532  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 151
Target Start/End: Complemental strand, 39954957 - 39954885
Alignment:
Q  79 agaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgt 151  Q
    |||||| |||| |||||||||||||||||||||||| ||| |||||||| ||| | || || |||||||||||    
T  39954957 agaatgtgattcgtgatgctgttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgt 39954885  T

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Target: chr3 (Bit Score: 71; Significance: 7e-32; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 21584766 - 21584633
Alignment:
Q  21 agaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaa 120  Q
    |||| ||||||||||| | | |||||||||| |||||||||  | |||||||||||| |||||| |||| ||||||| ||||| |||||||||| |||||    
T  21584766 agagaatcagtggtttgatt-tatgaggaaacaagaggagttcttaagattttcttggagaatgtgattcgtgatgcggttacgtacactgagcatgcaa 21584668  T
Q  121 ggaggaagactctgactgctatggatgttgtttat 155  Q
    ||||||||||| |||||||||||||||||||||||    
T  21584667 ggaggaagactgtgactgctatggatgttgtttat 21584633  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 24923629 - 24923500
Alignment:
Q  21 agaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaa 120  Q
    |||| ||||||||||| | ||||||| ||||  ||||| || |||||||| |||||| ||||||  ||| |||||||||| || ||||||||||  ||||    
T  24923629 agagaatcagtggtttga-tctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcattcgtgatgctgtgacatacactgagcacgcaa 24923531  T
Q  121 ggaggaagactctgactgctatggatgttgt 151  Q
    ||||||||||  |||| || |||||||||||    
T  24923530 ggaggaagacagtgacagccatggatgttgt 24923500  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 25085051 - 25085180
Alignment:
Q  21 agaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaa 120  Q
    |||| ||||||||||| | | ||||| ||||  ||||| || |||||||| |||||| |||||| |||  ||||||| ||||| ||||||||||  ||||    
T  25085051 agagaatcagtggtttga-tatatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtgatccgtgatgcagttacatacactgagcacgcaa 25085149  T
Q  121 ggaggaagactctgactgctatggatgttgt 151  Q
    ||||||||||| |||| || |||||||||||    
T  25085150 ggaggaagactgtgacagccatggatgttgt 25085180  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 39 - 151
Target Start/End: Complemental strand, 24497411 - 24497299
Alignment:
Q  39 atctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactg 138  Q
    |||||||| ||||  ||||| || |||||||| |||||| | |||| |||  ||||||| ||||| ||||||||||  ||||||||||||||| |||| |    
T  24497411 atctatgaagaaaccagaggtgtcttgaagatcttcttggaaaatgtgatccgtgatgcagttacatacactgagcacgcaaggaggaagactgtgacag 24497312  T
Q  139 ctatggatgttgt 151  Q
    | |||||||||||    
T  24497311 ccatggatgttgt 24497299  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 24982059 - 24982188
Alignment:
Q  21 agaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaa 120  Q
    |||| ||||||||||| | | ||||| ||||  ||||| || |||||||| |||||| ||||||  ||  ||||||| ||||| ||||||||||  || |    
T  24982059 agagaatcagtggtttga-tatatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactgagcacgcta 24982157  T
Q  121 ggaggaagactctgactgctatggatgttgt 151  Q
    ||||||||||| | || || |||||||||||    
T  24982158 ggaggaagactgttaccgccatggatgttgt 24982188  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 31825726 - 31825597
Alignment:
Q  21 agaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaa 120  Q
    |||||||||||||||| | ||||||| ||||  ||||| || |||||||| |||||| ||||||  ||  ||||||| || || ||||||||||  || |    
T  31825726 agaggatcagtggtttga-tctatgaagaaactagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcggtcacatacactgagcacgcta 31825628  T
Q  121 ggaggaagactctgactgctatggatgttgt 151  Q
    ||||||||||  | || || |||||||||||    
T  31825627 ggaggaagacagttaccgcgatggatgttgt 31825597  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 148
Target Start/End: Complemental strand, 24920038 - 24919929
Alignment:
Q  39 atctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactg 138  Q
    |||||||| ||||  ||||| || |||||||| |||||  ||||||  ||| |||||||||| || ||||||||||  || |||||||||||  |||| |    
T  24920038 atctatgaagaaaccagaggtgtcttgaagatcttcttagagaatgtcattcgtgatgctgtgacatacactgagcacgctaggaggaagacagtgacag 24919939  T
Q  139 ctatggatgt 148  Q
    | ||||||||    
T  24919938 ccatggatgt 24919929  T

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Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 60 - 155
Target Start/End: Complemental strand, 14261163 - 14261068
Alignment:
Q  60 gtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgtttat 155  Q
    |||||||||||||||||| |||||| |||  | ||||||||||| || ||||| | ||| |||||||||||  | |||||||||||||||||||||    
T  14261163 gtgttgaagattttcttggagaatgtgataagagatgctgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgtttat 14261068  T

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Target: chr2 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 60 - 155
Target Start/End: Original strand, 41027623 - 41027718
Alignment:
Q  60 gtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgtttat 155  Q
    ||||||||||| || ||| ||||||  ||| ||||||||||||||||||| ||||  || ||||| |||||| | |||||||||||||||||||||    
T  41027623 gtgttgaagatctttttggagaatgttattcgtgatgctgttacttacacagagcacgctaggagaaagactgttactgctatggatgttgtttat 41027718  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 60 - 155
Target Start/End: Original strand, 22898604 - 22898699
Alignment:
Q  60 gtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgtttat 155  Q
    ||||||||||| || ||| |||||| |||| | |||||||| |||||||||||||  || || ||||||||  | |||||||||||||| ||||||    
T  22898604 gtgttgaagatatttttggagaatgtgattagagatgctgtgacttacactgagcacgctagaaggaagacggttactgctatggatgtggtttat 22898699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 60 - 155
Target Start/End: Original strand, 22950272 - 22950367
Alignment:
Q  60 gtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgtttat 155  Q
    ||||||||||| || ||| |||||| |||| | |||||||| |||||||||||||  || || ||||||||  | |||||||||||||| ||||||    
T  22950272 gtgttgaagatatttttggagaatgtgattagagatgctgtgacttacactgagcacgctagaaggaagacggttactgctatggatgtggtttat 22950367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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