View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_low_16 (Length: 529)
Name: NF2071_low_16
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 27 - 289
Target Start/End: Original strand, 43339408 - 43339669
Alignment:
| Q |
27 |
gctactagtacatggtacaaagagatatcatggctaaaatatttgccaatatattttgtgtgtggatgaggatttgcatgttataaatggcatgtagtaa |
126 |
Q |
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| T |
43339408 |
gctactagtacatggtacaaagagatatcatggctaaaatatttgccaatatattttgtgtgtggatgaggatttgcatgttataaatggcatgtagtaa |
43339507 |
T |
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| Q |
127 |
ttaataatggaaaaacatggtattaaactcttgcactaaaaagtgaaacactagatctatttacacattaaaaactagtagaaagaaacagaacagaact |
226 |
Q |
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| T |
43339508 |
ttaataatggaaaa-catggtattaaactcttgcactaaaaagtgaaacactagatctatttacacattaaaaactagaagaaagaaccagaacagaact |
43339606 |
T |
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| Q |
227 |
tgcatggaccacaatagtaggagaaaaaaacaaactaacattgtgaatgaatattctctgtct |
289 |
Q |
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| T |
43339607 |
tgcatggaccacaatagtaggagaaaaaaacaaactaacattgtgaatgaatattctctgtct |
43339669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 322 - 512
Target Start/End: Original strand, 43339701 - 43339891
Alignment:
| Q |
322 |
ctttagatatagaaaaggtatagtaccttttctgagaggtgttggaaacagctgttactttgttattatcaccattctgtaactctactctcttaggaca |
421 |
Q |
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| T |
43339701 |
ctttagatatagaaaaggtatagtaccttttctgagaggtgttggaaacagctgttactttgttattatcaccattctgtaactctactctcttaggaca |
43339800 |
T |
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| Q |
422 |
acaggtttgtgatgatgaagattctttgttacctctcacatgttgaaaaccattgtttgaagaagaaaagtagttaccaaatgagattctt |
512 |
Q |
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| T |
43339801 |
acaggtttgtgatgatgaagattctttgttacctctcacatgttgaaaaccattgtttgaagaagaaaagtagttaccaaatgagattctt |
43339891 |
T |
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