View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_low_17 (Length: 528)
Name: NF2071_low_17
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 8 - 512
Target Start/End: Original strand, 5686923 - 5687425
Alignment:
| Q |
8 |
gaaaagaaattttgtcatcacagtgacagcaaataaagatcagttaccaagtaagtgtgatcctgagaattacttttttggatggtatatttggaccgac |
107 |
Q |
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|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||| |
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| T |
5686923 |
gaaaaggaattttgtcatcacagtgacagcaaatagagatcagttaccaagtaagtgtgatcctgataaatactattttggatggtatatttggaccgac |
5687022 |
T |
|
| Q |
108 |
aaatatcatgttgtaagaagtccaattgcagtgtcttttcaatgaaaaaacattatagtattcttgtactcattttcttatattgattagtttattttag |
207 |
Q |
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| T |
5687023 |
aattatcatgttgtaagaagtccaattgcagtgtcttttcaatgaaaaaacattatagtattcttgtactcattttcttatattgattagtttattttag |
5687122 |
T |
|
| Q |
208 |
tgtttgttcaaaaggacaaactattagagagagtgagagacaggatcacaataaatagataagataaa--tattcttagaaatggtaggaccagattatg |
305 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| || |
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| T |
5687123 |
tgttttttcaaaaggacaaactattagagagagtgagagacaggatcacaataaatagataagataaatgtattcttggaaatggtaggaccagattgtg |
5687222 |
T |
|
| Q |
306 |
ttcaagatgtgaatgtaatgtcatttgagactcnnnnnnnnnnnnnnnnnngttgaagaaatgttatttgagccttgattgatataatgcattgtttgag |
405 |
Q |
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| T |
5687223 |
ttcaagatgtgaatgtaatgtcatttgagactc--------tttttttgttgttgaagaaatgttatttgagccttgattgatataatgcattgtttgag |
5687314 |
T |
|
| Q |
406 |
cccatctctcgttg----tataatgatgaagtatgatagtatttttaccttttgatgctttggatgattgagttcttgaacaagattttattcaagttta |
501 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5687315 |
cccatctctcgttgtatatataatgatgaagtatgatagtatttttaccttttgatgctttggatgattgagttgttgaacaagattttattcaagttta |
5687414 |
T |
|
| Q |
502 |
tactatatatt |
512 |
Q |
| |
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||||||||||| |
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| T |
5687415 |
tactatatatt |
5687425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 8 - 325
Target Start/End: Original strand, 5699128 - 5699466
Alignment:
| Q |
8 |
gaaaagaaattttgtcatcacagtgacagcaaataaagatcagttaccaagtaagtgtgatcctgagaattacttttttggatggtatatttggaccgac |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5699128 |
gaaaagaaattttgtcatcacagtgacagcaaataaagatcagttaccaagtaagtgtgatcctgagaattacttttttggatggtatatttggaccgac |
5699227 |
T |
|
| Q |
108 |
aaatatcatgttgtaagaagtccaattgcagtgtcttttcaatgaaaaaacattatagtattcttgtactcattttcttatattgattagtttattttag |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||| ||| |
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| T |
5699228 |
aaatatcatgttgtaagaagtccaattgcagtgtcttttcaatgaaaaaacattatagtattcttgtactcattttcttacgttaattaattta--ctag |
5699325 |
T |
|
| Q |
208 |
tgtttgtt----caaaaggacaaac----------tattagagagagtgagagacaggatcacaataa----atagataagataaatattcttagaa--- |
286 |
Q |
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|||||||| | ||||||||||| |||| |||||||||||||| ||||||||||||| ||||||| |||||||||| |||||| |
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| T |
5699326 |
tgtttgtttgtcctaaaggacaaactattggagattatttgagagagtgagagataggatcacaataaatagatagataggataaatattattagaaatc |
5699425 |
T |
|
| Q |
287 |
atggtaggaccagat--tatgttcaagatgtgaatgtaatg |
325 |
Q |
| |
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||||||||||||||| | ||||||| ||||||| |||||| |
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| T |
5699426 |
atggtaggaccagataatgtgttcaatatgtgaaagtaatg |
5699466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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